Magallana gigas (Pacific oyster): 105321222
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Entry
105321222 CDS
T03920
Name
(RefSeq) exosome complex component RRP4
KO
K03679
exosome complex component RRP4
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105321222
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crg03019
]
105321222
Messenger RNA biogenesis [BR:
crg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
105321222
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
105321222
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GFIT
Motif
Pfam:
RRP4_S1
KH_6
ECR1_N
ECR1_N_2
EXOSC1
Motif
Other DBs
NCBI-GeneID:
105321222
NCBI-ProteinID:
XP_011417777
UniProt:
K1QXY9
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Position
2:complement(24554054..24559215)
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AA seq
292 aa
AA seq
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MDIRVSAAGKDRDTRSHVEEIENLVTPGDIITSDSGFMRGHGTYNSEDDRLLASVAGVVE
RVNKLICVKPLKTRYNGEIGDVVIGRIIEVQQRRWKVETHAKLDSSLLLSSVNLPGGELR
RRSEEDEKMMREYLKEGDLISAEVQSVFADGSLSLHTRSLKYGKLGQGTLVQVSPSLIKR
RKTHFHHLPCGATIILGNNGYVWICPTETEEMDQTGGYELNLKPVQRSDREVVARLRNCV
QLLAAQKMQLYDTSVLYTYEASLNFKIKDILKPEIGLEILEQTQHRLEIEGT
NT seq
879 nt
NT seq
+upstream
nt +downstream
nt
atggatattagggtcagcgcggctgggaaggacagagatacaagatcacacgtagaggag
attgaaaatctagttacaccaggggatataattacttcagattcaggtttcatgcgagga
catgggacctataattctgaagacgacagattattagcttccgtagcaggggttgtggaa
cgggtcaacaaactgatttgtgtcaaacccttaaaaacaaggtataatggagagataggg
gatgtggtgataggaaggatcattgaagtccagcagagaagatggaaggtggagactcat
gcaaagttagattcctctctccttctgtcatctgtcaatctacctggaggagaacttaga
agaagatctgaggaagacgaaaagatgatgagagagtaccttaaggagggtgacctaatt
agtgcagaggtccagtctgtgtttgctgatggctccctctcattgcacacaagaagtctc
aaatatggcaagcttggacaaggaactttggtccaggtttctccgtctctgattaagcga
agaaaaacacatttccatcacctaccttgtggagccaccattattctgggaaacaatggc
tatgtgtggatctgtccgacggaaacagaagagatggaccagacagggggctacgagctc
aatttgaagccggtacagaggtcagacagagaagtggttgctaggttacggaattgtgtg
cagctgcttgctgctcaaaaaatgcagttgtatgacaccagtgtactttatacctatgaa
gcatcccttaattttaagattaaggatattttgaaaccagaaattgggttggaaatcctt
gaacaaacacaacatagactggaaatagagggaacatga
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