KEGG   Magallana gigas (Pacific oyster): 105321222
Entry
105321222         CDS       T03920                                 
Name
(RefSeq) exosome complex component RRP4
  KO
K03679  exosome complex component RRP4
Organism
crg  Magallana gigas (Pacific oyster)
Pathway
crg03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:crg00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    105321222
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:crg03019]
    105321222
Messenger RNA biogenesis [BR:crg03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     105321222
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     105321222
SSDB
Motif
Pfam: RRP4_S1 KH_6 ECR1_N ECR1_N_2 EXOSC1
Other DBs
NCBI-GeneID: 105321222
NCBI-ProteinID: XP_011417777
UniProt: K1QXY9
LinkDB
Position
2:complement(24554054..24559215)
AA seq 292 aa
MDIRVSAAGKDRDTRSHVEEIENLVTPGDIITSDSGFMRGHGTYNSEDDRLLASVAGVVE
RVNKLICVKPLKTRYNGEIGDVVIGRIIEVQQRRWKVETHAKLDSSLLLSSVNLPGGELR
RRSEEDEKMMREYLKEGDLISAEVQSVFADGSLSLHTRSLKYGKLGQGTLVQVSPSLIKR
RKTHFHHLPCGATIILGNNGYVWICPTETEEMDQTGGYELNLKPVQRSDREVVARLRNCV
QLLAAQKMQLYDTSVLYTYEASLNFKIKDILKPEIGLEILEQTQHRLEIEGT
NT seq 879 nt   +upstreamnt  +downstreamnt
atggatattagggtcagcgcggctgggaaggacagagatacaagatcacacgtagaggag
attgaaaatctagttacaccaggggatataattacttcagattcaggtttcatgcgagga
catgggacctataattctgaagacgacagattattagcttccgtagcaggggttgtggaa
cgggtcaacaaactgatttgtgtcaaacccttaaaaacaaggtataatggagagataggg
gatgtggtgataggaaggatcattgaagtccagcagagaagatggaaggtggagactcat
gcaaagttagattcctctctccttctgtcatctgtcaatctacctggaggagaacttaga
agaagatctgaggaagacgaaaagatgatgagagagtaccttaaggagggtgacctaatt
agtgcagaggtccagtctgtgtttgctgatggctccctctcattgcacacaagaagtctc
aaatatggcaagcttggacaaggaactttggtccaggtttctccgtctctgattaagcga
agaaaaacacatttccatcacctaccttgtggagccaccattattctgggaaacaatggc
tatgtgtggatctgtccgacggaaacagaagagatggaccagacagggggctacgagctc
aatttgaagccggtacagaggtcagacagagaagtggttgctaggttacggaattgtgtg
cagctgcttgctgctcaaaaaatgcagttgtatgacaccagtgtactttatacctatgaa
gcatcccttaattttaagattaaggatattttgaaaccagaaattgggttggaaatcctt
gaacaaacacaacatagactggaaatagagggaacatga

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