Magallana gigas (Pacific oyster): 105321335
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Entry
105321335 CDS
T03920
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3-B isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
crg
Magallana gigas (Pacific oyster)
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
crg04121
]
105321335
Enzymes [BR:
crg01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
105321335
Ubiquitin system [BR:
crg04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
105321335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-TRAF
zf-RING_2
Sina_ZnF
zf-RING_5
zf-rbx1
zf-C3HC4_4
TRAF3_RING
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
105321335
NCBI-ProteinID:
XP_065939294
LinkDB
All DBs
Position
4:57367210..57475493
Genome browser
AA seq
1090 aa
AA seq
DB search
MGFDVDAFVSTVGEELRCELCRGVLDNPLRTACSHVFCSGCILPWVVSTGRCPRGCQRLT
PEDLGNELELRDCILNLSVHCEYKDRGCKRLVRLREMGVHRADCDHRPVPCKNDGCKLVL
SSREMEKHVTGDCPYKEVGVCPKGCSLVLLQSTVGSHDCVSALRAYIAGQENRINTMETE
LQRTGLMASKRERELVNQITLLQNENQLQSLEFQRKLSEISTKLKKSSNKCADVSTNTDD
AVWRALTVTLQRQGGALGFNIMGGFTPEPNNNETEKRGEMAGGVEVSRVTENSPAEKNGL
KIHDIITQVNGQDLSQASHEEAVEAFRAAAEPITVEVLRRVSKTKMKNTPPAMVSTSTQT
EEELYSRPPTPPFFTYPPGLYEAGTRRPLAFSPSTDMGLTDIEMAHNMDYDDPYFDDRVG
YEMEYEEVILHRSVEHQKLGLTLCYGSLEDETTDIFISEVEAHSIAAQDGRIREGDQVLQ
VNGVDVRSRDQAIQLFSDRGADIRLLLARPHLQLDDGFMEDQNVSLDDLHMDILEKHHRD
NMQIMASMLARGHMEEEGGTTDTATTENSLHKHEKDSGVGRTDESTRNDESSEQDPDTEC
TNSPAATSKFRRKKPNYSDDSVLSNEVTDVTDYSNECDSFQAHLESRCANEMEDSPHKNS
KRKDSVSSIERELALLNKEMETIHMECQEMCDKHTKDLGKNQLQREALTIKSPRIVPRMG
TRLEYLKYVQLYDNPNSLDRRDTLPKQVSQQTKTACDKDASTTTSAYNTGESCRSTPLTL
ELNQASDEGDFKNSMLCLAPSNTNVSALSDTEKQTQTPCGQNEGSSDEYASIGPGLEASA
SLRKQNCMGESLQDLYMQYADVMYTNQANLQHTIAIQQKLFQQQIEQNPMRSRKNNGVSQ
QPPSSGASSVSGQVENKSRDSPNVSRDSPNITRDSPNATPPDSSGQMEWVVKRRPDGTRY
ITRRPMKSKLLKERAKKISEERCGMTTDDDAMSELKFGRYWSKEERKKHIEKARDHKRKR
ECMMKAKMETLKEAEEKKEINIVELSHRKMMKHKNKKVLDNFVTVQEMLAHGSRVTDGKT
YNPLLSVTTV
NT seq
3273 nt
NT seq
+upstream
nt +downstream
nt
atggggtttgatgtggatgcttttgtgtccactgttggcgaggagttgcgctgtgagtta
tgccgcggggtgctagataacccgctacggaccgcgtgcagccatgtcttctgttcgggg
tgcatccttccctgggtggtcagtaccgggcgttgccccaggggctgtcagcgcctgacc
cccgaggatctcgggaacgagttagaattacgagactgcatactgaatctgagcgttcac
tgtgagtacaaggacagaggctgtaagaggttagtccgtctgagagagatgggggtacac
agggcggactgtgaccacaggcccgtgccctgcaaaaacgacggctgcaaactggtcctc
agctccagggagatggagaaacacgtgaccggggactgcccatataaggaagtgggggtc
tgccccaagggctgtagcctggtcttgttacagagtaccgtgggctcccacgactgtgtg
tccgccctcagggcctacatcgccgggcaggagaacaggatcaacacaatggagacagag
ctacagaggactggtctgatggcctccaagagagaacgggagctggtgaatcaaattact
ctactccagaacgaaaatcaactgcagtctctggaatttcaacggaagttgagtgaaatt
tcaaccaagttgaaaaagagcagtaacaaatgcgctgatgtttcaacgaacacggacgat
gctgtttggcgggctctgaccgtgacactgcagagacagggcggtgccctgggcttcaac
atcatgggcggatttacgccggaacccaacaacaatgagacagagaaacgtggcgagatg
gcgggaggggtggaggtttccagggtaacggagaacagccccgcagaaaagaatggactc
aagatccatgacatcatcactcaggtaaatggtcaggatctgtcacaagccagtcacgag
gaggcagtagaggcgttccgcgcggctgccgagccaatcacagtggaggttctacgacgc
gtcagcaagacaaagatgaagaacacacccccagcaatggtgtccacatctacccagaca
gaggaggagctgtacagtcgaccccccaccccgccattcttcacctaccccccagggttg
tacgaggccgggacccgccgacccctggctttctccccgagtacagacatgggtctcacc
gacatagagatggcccacaacatggattatgacgacccatactttgatgacagagtagga
tacgaaatggagtacgaggaagtgatccttcaccgatcggtggaacaccagaagttagga
ctgaccttgtgttatggttccctagaagacgagacgacagacatatttattagtgaggtt
gaggctcacagtatagctgctcaggatggacggatcagggagggggaccaagttctccag
gtgaatggggtggatgttcggagcagggaccaggcgattcagctgttctcagaccgaggg
gcagacatcaggcttctgttggccagaccacacctccagctggatgatgggttcatggaa
gaccagaatgtgagtctggatgatttacacatggacatcctagagaagcatcaccgtgac
aacatgcaaatcatggcgtccatgttggctcggggacacatggaggaggaagggggaacc
acagacacggccaccaccgaaaactcgctccacaaacacgagaaagatagtggggtgggg
cgcacggacgaaagcacgcgcaacgacgagagctcggagcaggatccagacacagagtgc
actaattctccggccgcgacgtccaagttccgacggaagaagccgaactacagtgatgac
agtgtgttgtctaatgaagtgaccgatgtcacggactacagcaacgagtgtgacagtttc
caggctcacttggagagcaggtgtgctaacgagatggaggactcgccacacaaaaactca
aagagaaaggactcagtgagcagtattgagcgagaactcgcgcttctgaacaaagaaatg
gaaacaattcacatggaatgtcaggaaatgtgtgacaaacacacaaaggacctaggcaag
aatcagcttcagcgtgaagctttgacaattaaaagtccaagaattgtacccagaatggga
acaaggctagaatatttaaaatatgtgcaattatatgacaacccaaattctttggatcgt
cgcgacaccttacctaaacaggtttctcagcagacgaagacagcgtgtgacaaagacgca
tctaccacaactagtgcttacaacacgggagagagctgtcgcagcacgccactgactcta
gaactgaatcaggcctcagacgaaggcgacttcaagaactccatgctgtgtctggctccc
tccaacacaaacgtctccgcgctgagtgacaccgagaaacagacacagaccccgtgcggt
cagaacgaggggtccagtgatgagtacgctagcattgggccagggctcgaggcatccgca
agtctccgcaaacagaactgtatgggcgagtcccttcaggacctgtacatgcagtatgcc
gacgttatgtacaccaaccaggccaacctacaacacaccatagccatccagcagaaactg
ttccagcaacaaattgagcagaacccaatgaggagcagaaagaacaatggcgtctcccag
cagcctccatcttctggtgctagctcagtcagtggtcaagtggagaataaatccagagac
agtccaaatgtctctagagacagccccaatattaccagagacagcccaaatgccacacct
ccagacagtagcggtcaaatggagtgggtggtgaaacgtcggccagatggtacacgctac
attacacgccgtccaatgaaaagtaagcttctgaaagagagagcaaagaaaatctcagag
gaacgttgtggaatgaccacggatgatgatgcaatgagtgaactgaaattcggacgttat
tggtcaaaggaggagcgtaaaaagcatatagaaaaggcacgtgaccataagcgaaaacgc
gagtgcatgatgaaagctaaaatggagacacttaaagaagctgaggaaaagaaagaaata
aacattgtggaacttagtcatcgaaagatgatgaaacataaaaacaagaaagtgttagac
aattttgtgactgtgcaggagatgctggctcacggaagtcgagtgacagacgggaaaacg
tacaacccgctgctttccgtgacgacagtttga
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