Magallana gigas (Pacific oyster): 105321713
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Entry
105321713 CDS
T03920
Name
(RefSeq) TATA-binding protein-associated factor 172
KO
K15192
TATA-binding protein-associated factor [EC:5.6.2.-]
Organism
crg
Magallana gigas (Pacific oyster)
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
crg03021
]
105321713
Transcription machinery [BR:
crg03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
105321713
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3535
SNF2-rel_dom
Helicase_C
HEAT
TOR1L1_N
HEAT_EF3_N
HEAT_2
TPR_Trm732_C
Vac14_Fab1_bd
Arm
ResIII
PH_SMPa
Motif
Other DBs
NCBI-GeneID:
105321713
NCBI-ProteinID:
XP_011418434
LinkDB
All DBs
Position
7:complement(42129625..42153139)
Genome browser
AA seq
1823 aa
AA seq
DB search
MTTRLDRLFLLLDTGSTPLIRKSAAEQLGEVQKLHPYELQNLLSKVHDYLKSSSWETRIA
AGQAVSAIARNVPKWNKKIPIKQETNGNVVEENPIQLLFTQFNIDKVLSQGASLLGAEEK
QYETEPLSMKDKDQLSLQRQMLNKRLGLDMAGNLGIGGDIFSDEDLVAGIKTENGDTYSN
KRSVSDILKQQLLDVTGGMSAREHSRIKRRAKILAKQRSKDCYNEQMSLDTEPPCKKAKS
QVSVDVGSSESKLVMEASVDIEEDEEWYFESFCELLMNDLFNSSWETRHGAATGLREVIR
IHGDSAGLSIDIPLDQLHTINQVWLTDLALRLLCVLSLDRFGDYVSDEVVAPVRETSAQT
LGMVIKHLDRCGVEGMVNVLLQLLAQQQWEVRHGGLLGFKYLLAVRQDMTDRILPAVLPS
LFRGLQDVDDDVRAVAAAALVPVAHDLVRLLPQQVPLILTCLWDTLLDLDDLTASTNSIM
TLLSTILTNPQASIRDWLSRPLPELVPRLWPFLRHSIASVRHSALQTFHTLLTLPEDQQS
VQPWLPFILQDALRHIFQRSLLEEKPNITKILEKVWNQLLLKAPLEYLVGNSLPWLGVWL
CLCMQPSKLPFDSSYLIEAKHRGRVHSDSEQGKSRHSIGTAQKSMDYIAGTETLNASVVD
RDMAVMRTRIMATRFLGLLCSYIIREIPNFPPEAEKPVISLSKLFLFHLNSKSAVQRFVI
AQVVYNLALSNKETKLPDEAVSKLLECLNDAIYFDEVAISFTHMQSDCRDFMAGLKQNGV
DIDSVIPPGGIITLDQASSLTTTIFDQAKTTLKPKSQQVFEDRRRQLKVIVDTTIQELQT
LTIRVQCSLAKAAVELDALPEKLNPVIRPLMDCIKKEQNKEIQQEAADCLCRLLKKCLDK
NPNPNSKVLKNLCTFLCVDPTFTPRVTLPIPSHTADESEVKCDSKFGIITLTKQQKTPDV
GKKWLKRAASVKNEESSSDQNQDNGETQEQHQIQRRGASLALTTIARVFGDDLPTSLPTL
WENVVEPLQGLGKENMLTEEKAQELVNSLQVLETLCTVMTLNLQLQLKERLPLLLDCLHS
HFTAVRHMAARCFGMLCQVMTLDLMTFIIEKIVPLMDIADNVIYRQGATEALACVIDGLG
LDLIPYIVLLVVQVLRRMSDQNEAVRLMATACFASLIRLMPLEAGITDPPEMSPALIAEK
EKQRKFLEQLMDGSKLEGYNIVVPVKAELRKYQQDGVNWLAFLNKYNLHGILCDDMGLGK
TLQSICIMASDHKLRDQKYQETQSMEFAPMPSIVICPPTLIGHWVYEVNKFVDEAHLNPL
MYAGPPGERARIQKKVKKHNLIVASYDVVRNDIDFFSTISWNYCILDEGHIIKNGKTKLS
KAVKQLVCNHRLILSGTPIQNNVLDLWSLFDFLMPGFLGTEKQFQARYGKPILQSRDAKS
TSKEQEAGALAMESLHRQVLPFILRRLKEDVLQDLPPKIIQDYYCELSPLQTQLYEDFAK
SRAKQGVEDSVTLLESTDNKERKSAGATHVFQALQYLRKLCNHPALVLTTSHPKYEEVTK
QLKTSNSSLRDCQHAPKLNALKQLLLDCGIGVAMPTGSGSGFAADQPVVNQHRVLLFCQL
KSMLNIVEEDLLKSQMPSVTYLRLDGSIPAGSRQQIVNRFNNDPSIDILLLTTHVGGLGL
NLTGADTVIFVEHDWNPMKDLQAMDRAHRIGQKKVVNVYRLITRGTLEEKIMGLQKFKMT
IANTIISQDNASLKTMGTDQLLDLFSLDDKAKGQEIVSSGGSSSDQNKRESIKSILENLG
DLWDEKEYESEYNLDNFIKSLKR
NT seq
5472 nt
NT seq
+upstream
nt +downstream
nt
atgacaacgagacttgacaggctgtttttacttctggatactggatcaaccccactgatt
cgaaaatcagcagctgaacaacttggggaggttcagaaactgcatccttatgaacttcag
aacctgctttcaaaggttcatgactacttaaaaagttcaagctgggagaccaggatagct
gcaggacaggcagtgtccgccattgcaagaaatgtgcccaagtggaacaagaaaattccc
atcaagcaagaaaccaatggcaatgtggtggaagaaaatcccattcaactgttgtttact
cagttcaacattgacaaggtgttgtctcaaggggcatcactcttgggagccgaagagaaa
cagtatgaaacggaaccactaagcatgaaggataaagaccaattgtcgttacaacgtcag
atgctgaacaagaggctaggactagacatggccgggaatcttgggataggtggggacatt
ttctcagatgaagatttggtagctggaataaaaacagagaatggagacacatattctaac
aagagaagtgtttctgacatcctgaaacaacaattgctggatgtgacgggtgggatgagt
gccagagaacacagccgaataaagcggcgagctaaaatcttggccaagcagaggtcaaaa
gactgctacaatgagcagatgtccctggatactgagcccccctgtaagaaggcaaagtcc
caagtcagcgtggatgtagggagcagtgagagcaagctggtcatggaggcctccgtggac
atcgaggaggatgaggagtggtattttgagtctttctgtgaattactgatgaatgacctt
ttcaacagtagctgggagacgcgacatggtgctgccactgggcttagggaggtcatccgt
atccatggcgactcagctggcttatccatagatattccactggatcagttgcacactatt
aaccaggtgtggttgacagaccttgccctcagactgctgtgtgtcctgtcccttgaccgg
tttggggactatgtctccgatgaagtggttgctccagtgagggagaccagtgcccagacg
ctggggatggtgatcaaacacctggacaggtgtggtgtggagggcatggtcaatgtctta
ctccagcttctggcccaacagcagtgggaggttagacatgggggcctgctaggctttaag
tacttgctggctgtcagacaggacatgacagaccggatcctgcctgcagtattaccctct
ctgttcaggggcctacaagatgtggatgatgatgtcagagctgttgccgcggcagcattg
gttcctgtggctcacgacctcgttagacttcttcctcaacaggtgcccttaatcctgact
tgtttgtgggacacactgttggatcttgatgacctcactgcctctactaacagtattatg
acacttttgtctaccatcctaacaaacccacaggcctcaatcagagactggttgtctcgc
ccccttcctgagctagttccaaggttgtggccatttcttcgacactccatagcctcagtc
aggcattcagccttacaaaccttccatactttgctgactttaccagaagaccaacaatca
gttcagccctggctgccattcatcttacaagacgcacttaggcacatatttcaaaggagt
ctgctggaagaaaaacccaacataaccaagatacttgagaaagtgtggaaccagttgttg
ctgaaagcaccattagaatacctggtggggaattccctgccctggctcggggtctggctc
tgtctttgtatgcagccttcaaagcttccatttgattcttcctaccttattgaggcaaag
cacagaggaagagtacattctgattctgaacaagggaagagcagacatagcattggtact
gcacagaagtccatggactacatagcagggacagagaccctgaatgctagtgtggtggac
agggatatggctgtaatgagaacacgcataatggccaccaggtttcttgggttgctgtgt
agctacatcataagagaaattcccaactttccacctgaagcagagaaaccagtgatctcc
ctttccaagctcttcctgttccacttaaatagcaagtcggctgtccagagatttgtgata
gctcaagtggtctacaacctggcactgtccaacaaggagaccaaactgcctgatgaagct
gtgtccaagctgctggagtgtttgaatgatgccatctattttgatgaagtggctatctca
ttcacacacatgcagtctgactgtcgagatttcatggcgggactcaaacagaatggagta
gatatagactctgtgattccaccaggaggcatcataaccttagatcaggccagttctctc
accacaacaatatttgaccaagctaaaaccacactcaaacctaaatctcagcaggtgttc
gaggacaggaggagacaactcaaggtcatagtggacacgaccattcaggagctccagacc
cttacaatcagggttcagtgtagtttagccaaggcagcagtagaactggatgcattgcca
gagaaactgaatcctgtcattcgcccattgatggactgcatcaaaaaggagcaaaataaa
gagattcagcaagaggcagctgactgcttatgtagattacttaagaaatgtctggacaaa
aaccctaaccctaattccaaggtcctgaagaacctgtgcacctttctgtgtgtggacccc
acctttacccccagagtcactttacccatccccagccacacagctgatgaaagtgaagtc
aaatgtgattctaagtttggcatcataaccctaacaaagcagcaaaagactcctgatgtt
gggaagaagtggctgaagcgggcagccagtgtaaaaaacgaagaatcatcttctgatcaa
aaccaggataatggcgagacacaagagcagcatcagatccagaggagaggggcgtcgctg
gcactgaccaccatcgcacgagtgtttggagacgacctccccaccagcctgcccactctg
tgggagaacgtggtggaacccctgcagggcctggggaaagaaaatatgctgacagaggag
aaagcccaggaactggtcaactctctgcaggtgctggaaacactatgtacagtaatgact
ctaaacctacagttacagttgaaagaaaggttaccattactgctggattgtctgcacagt
cacttcactgcggtccgtcacatggcagccaggtgttttggaatgctctgtcaggtcatg
actcttgaccttatgacctttatcattgaaaaaatagttccactcatggatattgctgat
aatgtcatatacaggcagggagcaacagaagctttggcttgtgtgatagatggtcttgga
cttgatctgatcccgtacattgtgctgctggtggtgcaggtccttcgtcgtatgagtgac
cagaacgaggcggtcagattaatggccaccgcttgcttcgcctcactcatccgcttgatg
ccactagaggctggaataacagatcctccagaaatgagtcctgccctcattgcagagaaa
gagaagcaaagaaaattcctggagcaactgatggatggatccaaacttgagggctataac
attgtggtgcctgtcaaagcagaactaaggaagtaccagcaggatggtgtgaactggctg
gctttcctgaacaagtacaatctacacggcattctctgtgatgacatgggactgggcaaa
accctgcagtccatctgtataatggcctctgaccacaaactcagagatcaaaaataccag
gagactcagtccatggagtttgcccccatgccctccattgtgatctgtccccccactctg
attggacactgggtgtatgaggtcaacaagtttgtggacgaggctcaccttaatcccctc
atgtacgctggtccccccggagaacgagccagaattcagaagaaggtgaagaagcacaat
ttgattgtagcatcgtatgacgtggtgaggaatgacattgacttcttcagtaccatcagc
tggaactactgtattctggacgaagggcacatcattaagaatggcaagaccaaactctct
aaagcagtgaaacagttggtctgcaaccatcgtttaatcctgtcagggacccccatccag
aacaatgtcctagatctgtggtctctctttgactttctgatgccaggattcctgggaaca
gagaaacagttccaagccagatatggcaaacccattctacagagcagggatgctaaaagt
acttccaaggagcaggaagcaggtgctttggcgatggaatctcttcacagacaggttctt
ccgttcatcctccgtcgtctgaaggaagacgtcttgcaggatcttccacccaagatcatt
caagattactactgtgaacttagtcctctacagacacaattgtatgaggactttgccaaa
tcccgagcgaagcagggtgtggaggattctgtcacgttactggagagtacggataacaag
gagaggaagagtgctggtgctactcatgtcttccaggcattgcagtatttgaggaagctg
tgcaatcaccctgcccttgttttgactactagtcatcctaagtatgaggaagttacgaag
cagctcaagaccagtaactcctccttacgagactgtcaacacgcacccaaactgaacgcc
ttaaaacaactgctgttggactgtggaattggtgttgccatgccgacaggctctgggtca
gggtttgcagcggatcagcccgttgttaatcagcatcgtgtcctgttgttctgtcagctg
aaaagtatgctcaacattgtagaagaggacctgctgaagtcacaaatgccttccgtgacc
tacttacgactagatggcagtattccagcaggatccagacaacagattgtaaacaggttc
aacaatgacccctccattgacattctgttgttgaccacacatgtgggagggctaggtctg
aacttgaccggggccgacacggttatatttgtggaacatgactggaatccaatgaaggat
ctacaggcaatggatcgggctcatagaattggacaaaagaaagtggtcaatgtttacagg
ttgattacaagagggacactggaggaaaaaatcatggggcttcaaaagtttaagatgaca
attgccaacactatcatcagccaagacaatgctagtctcaaaaccatgggaacagaccaa
ctgctagatttgttttcattggacgataaggctaaaggtcaagagatagtgtcctctggt
ggcagcagtagtgatcaaaacaaacgggagagcatcaagtccattctggaaaatctagga
gatttatgggacgagaaggaatatgagtctgagtataacttggataatttcataaagtcg
ctgaaacgataa
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integrated database retrieval system
