Magallana gigas (Pacific oyster): 105321855
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Entry
105321855 CDS
T03920
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB3
KO
K03011
DNA-directed RNA polymerase II subunit RPB3
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg03020
RNA polymerase
crg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
105321855
09124 Replication and repair
03420 Nucleotide excision repair
105321855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
crg03021
]
105321855
03400 DNA repair and recombination proteins [BR:
crg03400
]
105321855
Transcription machinery [BR:
crg03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
105321855
DNA repair and recombination proteins [BR:
crg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
105321855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
tRNA-synt_1g
Motif
Other DBs
NCBI-GeneID:
105321855
NCBI-ProteinID:
XP_011418634
UniProt:
A0A8W8K502
LinkDB
All DBs
Position
3:29102937..29108864
Genome browser
AA seq
273 aa
AA seq
DB search
MPYANQPTVQITQLSEENIKFVLEDTDLSVANAIRRVCIAEVPTVAIDWVQIESNSTVLF
DEFIAHRIGLIPLTSDEVVDRMQYSRDCTCEEFCPECSVEFTMDVKCTEDQTKHVTSADL
ISSNPKVLPVTSKNKEETSEYEDTDDILIVKLRKGQELKVRAFARKGFAKEHAKWNPTCG
VAFEYDPDNSLRHTLYPKPEEWPKSEYSELEEDVHEAPFDGLGQPNKYFFNAESCGSLKP
ENIMFSALAVLKKKLSDLQTQLSHEIQQDVLAV
NT seq
822 nt
NT seq
+upstream
nt +downstream
nt
atgccgtatgcgaatcaaccaacggtacaaattacacagctctcggaggaaaacataaag
ttcgttcttgaagacacggatttaagtgtcgccaatgcaataagaagagtatgcatagca
gaggtacctacagttgcaattgactgggttcagatcgagtcaaattccacagttttgttt
gatgagttcattgcacacaggataggccttattccactgaccagtgatgaagtggtggac
cgcatgcaatattccagggattgtacttgtgaggagttttgtccagagtgctcagttgag
tttacaatggacgtaaagtgtactgaggatcaaaccaaacatgtgaccagtgctgacctg
atttcatccaatccaaaagtattgccagtgacatccaaaaacaaagaggagacaagtgaa
tatgaagatactgatgatattttgattgtgaaactcagaaaaggacaagagttaaaagtt
cgagcttttgctaggaagggtttcgcaaaagagcatgctaaatggaacccaacgtgtgga
gtggcttttgagtacgaccctgacaattcattgcgacacaccctgtacccaaaaccagaa
gaatggcccaaaagtgaatattcagagctagaggaggatgtccatgaagccccatttgac
ggactaggccaaccaaacaagtacttcttcaatgcggagtcctgtggttcactgaagccg
gaaaacatcatgttctcagccctagcagtgctcaaaaagaaactcagtgacttacagact
caactcagccatgagatccaacaagacgtgttggctgtttga
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