Magallana gigas (Pacific oyster): 105322032 Help Entry 105322032         CDS       T03920                                  Name (RefSeq) collagen alpha-1(V) chain   KO K19721   collagen type V/XI/XXIV/XXVII, alpha Organism crg  Magallana gigas (Pacific oyster) Pathway crg04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:crg00001]  09140 Cellular Processes   09142 Cell motility    04820 Cytoskeleton in muscle cells     105322032  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:crg00536]     105322032 Glycosaminoglycan binding proteins [BR:crg00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    105322032 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen COLFI Laminin_G_3 Laminin_G_2 Motif Other DBs NCBI-GeneID:  105322032 NCBI-ProteinID:  XP_011418855 LinkDB All DBs Position 2:complement(6514500..6540947) Genome browser AA seq 1769 aa AA seqDB search MFNSIAMRKPLHSVRSDMWTNVRIGYSILRTNMFFIFSILLIPGCLSANVALTNGQIDLL DAVRIEAVSKRTNGVCAGRDDNRAFQITGGEEFTADFQTVFPESIPEEFSIVASFRLNNM DLTNDKLSIPLLTIYNKQAREVLGLYVGPNSKFLLSDNEARTPVEKATSLESFAINDTKW HRIGISVSYGRLTSYINCELGDKESFKRSTEPVKNFDTEGMILIGQDFNDSPKFQGDIQD LIFIPFAEGGQDACSYYTPNCDHAFYTAAYHNSLSNETSGSSQGGQATGGMAVGGGEVVM MEKSDMGMGAGGMVMVDKSGMGVGGMGVDAGGMVMVDKSGMGAAGAGGVVMVDKSGMGTL DHSGGFLVDAETGETVGKMGGSVVMGKEGVPMIKYDASTGVSYAYRYGQVGPPGPRGPPG PPGRQGDPGFDGRDGIPGASGMPGPPGNVFIIDANFASKTSHQAQAFREILGQHMLAMRG APGPQGMTGIPGPAGPPGMDGPKGDIGNPGEQGIRGTMGFQGLAGQPGDRGKSGLDGERG ALGPPGEKGPPGYPGMPGFPGPKGERGHVGPTGSPGPVGPVGNVGDIGEAGPVGPPGEVG PRGFLGPQGRPGPIGNPGLPGLEGASGPKGNDGLIGAPGAPGQPGAPGALGPPGPPGPLG PPGIPGPMGKPGLPGLPGPVGPPGIAGTPGETGIKGDTGVMGLQGITGYPGPRGIKGDIG PFGNLGEKGEKGDLGIVGGKGDYGAPGEKGIQGEPGPPGLEGIEGTKGDPGPRGETGHAG PQGEKGIMGSQGMPGYPGPQGLVGPAGRNGRRGRRGARGKPGLPGPHGDTGEKGPPGPTG ERGKPGPVGQMGPKGESGVPGPPGFMGEQGIQGPPGPTGLMGPQGPQGLPGQDGFPGTSG ERGLPGEPGIPGSPGQMGVMGPQGPQGEPGAPGDRGTPGNQGMPGDTGLPGAAGDRGHPG PPGPPGNEGVQGPPGPPGAKGLRGYPGPPGKDGPAGEHGSPGPLGPRGEKGNIGDTGPAG SPGVPGPPGPIGSEGPPGTKGDAGLEGAPGFPGPEGSPGPRGYPGPAGPLGPPGEPGDKG PTGEPGSRGPKGDHGEMGPPGPQGPQGLQGSVGPMGNPGEPGIQGIQGPPGHKGATGPPG ATGMTGLQGLQGLPGLSGDKGEQGDRGMDGPPGAPGPQGEPGPVGPEGPTGKPGAPGLEG KQGLKGEQGIPGPAGSAGTDGLPGPVGEPGPKGENGRPGPQGPSGIRGEPGVPGPKGHPG MSGPPGVPGPQGSPGLKGEAGRDGPDGEQGPMGPVGQPGPPGEPGLPGQTGKQGEMGRPG TQGEPGPAGEKGDRGLPGPPGNRGIQGPQGNPGASGPAGPPGAAGPVGEAGAVGPPGIPG EQGLIGQPGPTGPKGETGEKGMKGHMGRVGPPGAIGDPGPKGEPGEPGPPGPKGDRGPIG PEGPPGFPGPEGTSGLPGPPGPSGPKGERGDTGQKGESGLPGPTGPAGPPGASQAFPADI FSSAFAPKVGGRRKRAINQVNQNSLEFDLNQIVQEMESKSYELQDGVTLLVGKLFGQIEK LDEEIQMIKYPTGKEGNPASSCNDIKLGNPGSTDGWYWVDPTLGASGDAIKVWCNMSSGS TCIYPTDDTKMSPLSYRNEEKGQSFSGLKSGFMIEYPDDIQLNLLRLFSGRATQTFTYYC KNSLAWYDEMYKDKNRAIILEGADKSQHKTKDLKNVIDGCKSRKGDGKTIFEISTKKVES LPIIDFIPTDYGQTDQQFGFEVGPVCFST NT seq 5310 nt NT seq  +upstreamnt  +downstreamnt atgtttaattccattgcaatgaggaaacctttacactcagttcgctcagacatgtggaca aatgttcgaatcgggtattcaatattaaggaccaatatgttttttattttttccatttta ctaattccaggatgtttaagtgccaacgtagcattaacaaatggtcagatagatctgttg gacgcagtgaggatagaagctgtttccaagaggacgaacggcgtatgtgccggcagagac gacaatcgggcattccaaatcacgggaggggaggagtttactgccgacttccagactgtc ttcccagaatcaattccggaggaattttccattgtggcttcctttagattaaacaacatg gatcttacaaacgataagttatctatacctctattgacgatttacaacaaacaagctcgg gaggtcttggggttgtacgtaggaccaaactccaagttccttctcagtgacaatgaagcg cgcaccccagtagagaaggccacgtcattggaatcctttgcaataaatgacaccaagtgg cacagaattggtataagcgtgagctatgggagacttacgtcatacatcaactgcgaactc ggggataaagaatcgttcaaacgtagcacagaacccgtcaaaaatttcgacacggaggga atgattttgattggtcaggatttcaacgactcgcctaaatttcaaggagatatccaagac cttattttcattcctttcgctgaggggggccaggacgcatgttcatactatactccaaac tgtgaccatgcattttacaccgctgcctaccataactctctgtctaacgagacctcgggt agttcccaggggggtcaggctaccggcggaatggcagtgggtggtggggaggtcgtgatg atggaaaagtcggatatgggcatgggtgccggagggatggtgatggtggataaatctggt atgggtgtcggaggaatgggtgttgatgccgggggaatggtaatggtggataaatcaggc atgggcgcggctggggccggtggagtggtaatggtggataaatcaggcatgggtacccta gatcactctggtggattccttgtggatgctgaaacaggcgagactgtggggaaaatggga ggttcggttgtaatgggaaaagaaggggtaccgatgattaagtacgacgcctcaactgga gtttcctatgcttaccgatacggccaagttggacccccaggacctaggggacctccagga ccccccgggagacagggtgatccgggttttgacggacgtgatggaattccaggggcatcc ggtatgccgggacctcccggaaatgtctttatcatagatgcaaattttgcctcaaaaaca tcccaccaagctcaagccttcagagaaatcctcggacagcacatgcttgcaatgcgtgga gccccaggaccccagggcatgaccggtatccccggcccagcggggcctccgggtatggat ggaccaaaaggagacattggaaacccgggagaacagggtattcgcggaacaatgggattc caaggattggcaggacagcctggagacaggggaaaatctggcttagacggagagagggga gcattgggtcctccaggtgaaaagggaccccctggttatcccggcatgcctggcttccca ggaccaaaaggagaacgaggacacgtcgggccaacgggttcacccggcccagtggggcca gtgggcaatgtgggagacatcggtgaggcagggcccgtgggaccaccgggagaagttgga cctcgaggttttcttggcccccaaggacgccccggacccatcggaaacccgggtctcccc gggctggagggtgcgtcagggcccaaaggaaacgatggattgattggagcccccggcgcc cccggacagccaggagcccccggggccttagggccccctggacctcctggcccccttggt cctcccggaattcctggacctatgggaaaacccggtcttcctggattaccaggtccagtt ggacctccaggtatagcaggtacccccggtgagaccgggataaagggagacacaggtgtg atgggactgcagggcatcacgggataccctggaccgcgcggcatcaaaggagacatcgga ccctttggaaatcttggggagaaaggcgagaagggagatcttggaattgtgggaggtaaa ggagactatggtgcaccaggagagaaaggaatacagggggaacccggtcctcccggtctg gagggaatagagggcacaaagggagatcccggcccccggggagaaacaggccacgccggt cctcaaggtgaaaagggaattatgggaagtcaaggaatgccgggatacccaggaccacaa ggactcgtggggcccgccggaaggaacggacgccgcggtaggagaggcgcacgcgggaaa cctggtttgcctggaccccatggagatactggagaaaaaggccctccgggtccgacggga gagagaggaaagccgggaccagtgggacaaatgggacccaagggagagtcaggagttcca gggcccccaggattcatgggggagcagggtatacagggacccccggggccaacaggtctc atgggcccacaaggcccgcagggtcttccaggtcaagacggctttccgggtacatcaggg gagaggggacttccgggcgagccaggtatacccggctcacctggacagatgggagtgatg ggaccacagggaccccaaggagagcccggagccccaggagacagaggaacacctggaaac caggggatgccgggagataccggacttccgggtgccgctggcgaccgtggacatccggga cctccgggaccacctggaaacgagggagtacagggaccacccggcccccctggtgctaaa ggcttgagaggttacccgggacctccgggtaaagatggaccggctggtgagcacggctct cctggaccgctgggaccaaggggtgaaaaaggtaacattggtgatactggaccagccgga agcccgggagtaccggggccacctggacctattggttccgagggacctccaggaacaaaa ggtgatgcgggacttgaaggtgctccaggatttccgggcccagagggatcgccgggaccg agaggatacccaggacctgccggtccattaggtccccctggagaaccaggagacaaagga cccacgggtgagccgggatccagaggcccgaaaggagaccacggagaaatgggaccacct ggacctcaaggaccacaaggtttacaaggaagtgtgggaccaatgggtaacccaggtgag ccaggcatacagggtatccagggacccccgggccacaagggagccacgggtccaccaggg gcaacaggcatgacgggattacaaggactccagggacttccaggattgtccggagataaa ggcgagcagggagacagaggaatggacggtccccccggcgctccaggaccgcagggagag cccggaccggtgggtccagaaggtccaacaggaaaacccggggctcccggattagaggga aagcagggtctgaaaggagagcagggaattcccggaccggccggatcagcgggaacggac ggccttcctggaccagttggcgaaccaggacccaaaggagagaacggaagacctggtccc cagggtccttcaggaatcagaggagagccaggtgtgccaggaccaaagggacatccgggg atgtcaggtcctccaggtgttcccggaccccagggttccccaggcttgaagggcgaggcc ggacgtgacggaccggacggagaacagggacccatgggaccagtcggtcaaccaggaccc ccaggcgagcctgggcttccgggacaaaccggaaaacaaggcgagatgggacgtccaggt acccagggtgagcccggtccagctggcgagaaaggagaccgaggacttccgggtccaccc ggaaatcgtggaatacaaggaccacagggcaacccaggtgcttcaggccccgcgggacct cccggcgcagctggtccagtgggtgaagcaggtgctgtgggacccccaggaatacccgga gaacagggactgataggacaacccggacccactggtcctaaaggtgagacaggggagaaa ggcatgaaaggtcacatgggacgagtgggacctccaggagctattggtgatcccggaccg aagggagagccgggtgagcccggacccccgggaccaaagggcgatagaggaccaattgga ccagagggacctcccggattccctggaccggaaggaacgtcaggcctgccaggacctcca ggaccctcgggacctaaaggagagcggggtgataccggacagaagggagaatctggactt ccgggacccactgggccggctggacctccaggagcatcccaagctttccccgctgacatt ttctcctctgcgttcgcgccaaaagtaggaggccgacgaaagcgtgcgatcaaccaagtc aatcaaaattccctggagtttgacctcaaccaaattgttcaggaaatggaaagcaagagc tacgaactccaagatggcgtcactctccttgttggaaaattatttggacagatcgaaaag ctagatgaagagattcagatgatcaaatacccgactgggaaagagggcaaccctgctagc tcctgtaacgacatcaaacttggaaacccaggatctactgacgggtggtactgggtcgat cccactctgggggcctcaggtgacgccatcaaggtgtggtgtaacatgtcgtcaggaagc acctgcatttaccccacagatgataccaaaatgtctccattaagttacagaaatgaagag aaggggcaatcgttcagtggtcttaaatcgggatttatgattgagtacccggatgacata caactgaaccttctgagactgttcagtgggcgagcgacgcaaacattcacgtattactgc aagaattcgctcgcatggtatgacgaaatgtacaaagataaaaaccgcgccattatccta gagggcgcggacaaatcccaacacaaaacgaaagacttgaagaacgtcatagacggttgt aagtcaagaaagggagatgggaaaactatatttgaaatctcgacaaagaaggttgagagt ttgcctataatagactttattcccacggattacggccagacagatcagcaattcggattc gaagtcggacccgtatgcttctccacataa

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