Magallana gigas (Pacific oyster): 105322221
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Entry
105322221 CDS
T03920
Name
(RefSeq) CCR4-NOT transcription complex subunit 4 isoform X2
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105322221
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
crg03000
]
105322221
03019 Messenger RNA biogenesis [BR:
crg03019
]
105322221
04121 Ubiquitin system [BR:
crg04121
]
105322221
Enzymes [BR:
crg01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
105322221
Transcription factors [BR:
crg03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
105322221
Messenger RNA biogenesis [BR:
crg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105322221
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
105322221
Ubiquitin system [BR:
crg04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
105322221
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
Torus
RRM_1
Vasculin
zf-UDP
zf-C3HC4
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
105322221
NCBI-ProteinID:
XP_011419110
LinkDB
All DBs
Position
5:complement(40497749..40512793)
Genome browser
AA seq
671 aa
AA seq
DB search
MSSEEPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKHYPEDPA
EFKPLTEDELQRIRKERKQKDLQRKQKAAENRKHLANVRVVQKNLVFVVGLSKKLADPET
LKKQEYFGKFGKIHKVVINQSTSYAGSQGPSASAYVTYNRCDDALKAILAVNNVHVDGRT
LKASLGTTKYCSHFLRGAQCQKQDCMYLHELGEEAASFTKEEMQMGKHQEYEQKLLEQYM
NSQNIANSQINCSKSIPIQKKTSSPITVNTPSETPPTPTQTDSPQSITPPTNSTPPNTSN
KEAWPCLQQGKTENGRPNPKPDTSKPNHRLLTDPPENSSLQKPTDPPVSTAVPPFKPPHR
LPLGVGLKPFENPATSLSLFSGNGFTRNQKIPVPTHTEVPDVPTTEIADSIPVSSCEDWQ
AAFGFSSKSRDSQDDDLGFDPWDESSKGLADLLEKENSSQSSQPQRTSFSQPNPQNLPPG
FSLSHIQQQQQHAQHPAFLRQDLVGSRMMNFLQPPPVYNSFNTETQDSHKVQNQNDVFST
KDWQDGLRALLPNINISFGAPPTNPATKSNHQPQKKWGVSAPSQSWMTNDPAILSSGSLA
NNGISDNAPHWLKSIHQLTEVESSPFMQHFPPRNSYSAGWPTTQNPPPGFQSTVHSTAQH
PEPHKISEGLQ
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcagaagaaccagtcgagtgtccgttgtgtatggaaccattagaaattgatgat
attaatttctttccctgcacatgtggatatcagatttgtagattttgttggcatagaatt
cgaacagatgaaaatgggctttgtcctgcttgcagaaagcactacccagaagaccctgca
gaattcaaaccccttacagaggatgagttacaaagaataagaaaagagaggaagcagaaa
gatctgcagagaaagcagaaagctgcggagaataggaagcatctagccaatgtcagggtg
gtacagaagaatttggtatttgttgttggtttatctaaaaagctagctgatccggagaca
ttaaaaaagcaggagtactttgggaaatttggaaaaattcataaagttgtgataaatcag
agtacttcatatgcaggatcacagggtccaagtgcgagtgcttacgttacctacaatcgc
tgtgatgatgctttaaaggccattttagctgtgaacaatgttcatgtagatggaagaact
ttaaaagcatcactcggaacaacaaaatactgtagccactttttgaggggagcccagtgc
caaaaacaggattgtatgtacttgcatgaattaggtgaggaagcagcaagttttaccaaa
gaggagatgcaaatgggtaaacatcaagaatatgaacaaaaattgttggagcagtacatg
aattcacagaacatagcaaacagccaaataaactgcagtaaatctattccaatacagaag
aaaacctcttccccaataacagtaaatacaccgtcagaaacccctcccacacccactcaa
acagactcgccccagagcatcacccctccgaccaactccacgccccccaacacatccaac
aaagaggcttggccatgtctacagcaaggaaaaacagaaaacggtcgacccaatcccaaa
ccggacactagtaaaccaaatcacagacttctaacagacccccccgaaaacagttcttta
caaaagccaacagatcctcctgtgtctacagcagtaccccccttcaagccaccccataga
ctacctttaggggtgggtctaaaaccatttgagaatccagctactagtctttcactcttt
agtgggaatggttttaccagaaatcagaaaatccctgtgcctactcacacagaagttcct
gatgttccaactactgaaatagctgactctatcccagtgtctagttgtgaagattggcag
gccgctttcggattcagctccaaatcaagagatagccaagatgatgacctaggatttgat
ccatgggacgaatcttccaaaggtctagccgatttgttagagaaggagaattcttcacaa
tcatcacagccccaaagaacaagtttttctcagccaaacccacaaaatctacccccaggt
ttttcactaagccatatacagcaacaacagcaacatgcacagcacccagcattcttaaga
caagatctggtcggaagtcgtatgatgaattttctacaacctcctcctgtgtacaattct
tttaacacagaaacacaagacagtcataaagttcaaaatcagaatgatgtattcagtaca
aaagactggcaagatggactacgggcattattaccaaatattaacatcagctttggtgct
cctcccacaaatccagcaaccaaatcaaatcaccagccacagaaaaagtggggggtttct
gcaccgtcacaaagttggatgacaaatgacccagcaattctttcctcaggatctcttgca
aataacggaatatcagacaatgctcctcactggttaaagtcaattcatcaactaacagaa
gtggaaagctcaccatttatgcagcattttccacccagaaattcatattctgctggttgg
cctactacacagaaccctccccctggattccagtctacagttcactccacagcacagcat
ccagagccacacaaaatctcggaaggtctacagtaa
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