Magallana gigas (Pacific oyster): 105322464
Help
Entry
105322464 CDS
T03920
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105322464
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crg03019
]
105322464
Messenger RNA biogenesis [BR:
crg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105322464
mRNA degradation factors
5'-3' decay
Decapping complex
105322464
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
CA109-like
WDR55
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
ANAPC4_WD40
Motif
Other DBs
NCBI-GeneID:
105322464
NCBI-ProteinID:
XP_011419499
LinkDB
All DBs
Position
3:complement(35016488..35032482)
Genome browser
AA seq
1396 aa
AA seq
DB search
MDHGDSPASSLQSTGDTGQLLQELLNLQKSNVLSTGSLNIPQGTTLHHITESTEVPGSGD
GTNPTLAELMMTMYDNPVPRQLITLQGSDTANSFSVYGREVEIITSKPNEAASSQAKTGS
NKVKTTPVVKFEWEPVYYIGNLVTLHRLNVYAAYSLRGKSGGVVRIINRKTAERALLKDL
TGKVVDIAFAYTDDVILAAVDEVGNLLVHSVREGDDKKIQVQLLLKITRPRGTIPTEYHR
VIWCPFIPDDCDDSSVTESSTQDASRVLVLTHGEKSEIWNVDMVTREHGSGPLSVDEVEF
GLIRIDSHTKAVMDAAFSPDGTALATASLDGEVKFFQVNMSESTSPRCLHQWKPHDGKPL
SSLFFLDDHRNSSADTQFWRFAVTGACNNQEIKIWSCESWVCLQTLRFMCPPDLPTNFSA
EPCMKAGLDLSAKYLVLSDIKRQVLYVLQIHQDSAANTAHVSSVSEFLLAQTCLSFAILD
ASKKKFKKVTEESHLDDITTGELDREEGGEDSEHKQEVPTASGIQIKLYTVHPKALQELL
IRFRPESTAPPAATPSVSTISHDDTGLQDALSDMSFSLDSSRIDNNTSLQQEQPVLLTPE
AFSTTSPRKDLSSTDPVRASGSSTSSLTQVTGLNEEMFSPHSSGDQSVLSEGSTITQTPT
EKEDPLSGRYSHDLTPTKLPPTGESLTSIAEITTEDKPSALQKVCVDDLFDSTRQSLGQT
LNSTDSSTRQSIENTSSTTGFEVGQLGAQKLSTMKESYDENDEEVAEVLGESYKEEVEEE
EEVEESLEDGPQSTQPFEEHSGDMESDPMPTSWPKPPDVRTETQEMEDIQNEEVYTEDDD
VQVEEEEEESKAENYDKDEEAGNDMDNLQEGSSEEIEEQIEEASEELQSPKEAPVAIPVA
KAREIIKEIHTREVIRENVDKDAINALNENIQSILAVLEAQNSKIESLQYQLVEQQEFHR
QQIESDVVPQQPQNIEEHLGKLEGIVTSRVERMFTQHTQKENQRVRELIQQSEQRDKQRQ
DRLQQILIQTMNNAVASNMEKQVRQEMANTILPSVTRILEPVKEQMHQEIAQKLTATDSI
IRDSIGKMVRSKQTIEALGVAAGNVLQTPIQLAYREAFQNIVVPSFDRAMQNIFQQVNET
FVKGTKETTRHLDTHLNEIREKHVEARDPIIAQLRKLTDSFQSSADSIQQQVLSTLQSRI
NAEIQSALSNLEETIVRYVRQAVKEEVSIAVREQGASISDSVLLAMRSGAVTPVQVTPDP
HQVQTQILNLLRQGQLNTAFQQALSASNLDLVVFVCETVNPSQVFNQSPCPLQQPVLLSL
IQQLSADIGNNTELKHKYLEEAVMNLDTSNPVTQGHMRGVLIGLIQKLKTYITAHPNDKT
TRSLRMLQMASESLLK
NT seq
4191 nt
NT seq
+upstream
nt +downstream
nt
atggatcacggggatagcccagcgtcatcccttcaatcaaccggcgacacaggccagctc
ttgcaggaattgttgaacctccaaaaatcaaacgttctttctactggaagtttgaatatt
ccacaaggaactactttgcatcacattacagagagcactgaggtccctgggtcaggtgat
ggaacaaatccaacattggcagaactgatgatgactatgtatgataacccagtgcccaga
cagttgatcaccctccagggaagtgatacagccaacagttttagtgtttatggaagagag
gtagaaataatcacaagtaaaccgaatgaagcagcaagttctcaagccaaaactggaagt
aataaggtgaaaactaccccagtagtgaaatttgagtgggaaccagtgtattatattgga
aatttggtaactctgcacagactgaatgtctatgctgcatattcactgagaggtaaatct
ggaggtgtggttcgaatcatcaataggaagacagcggagcgggcgttattgaaggacctg
acggggaaagtggtagacatagcattcgcttacacagatgatgtaattctggcagctgtg
gatgaagtaggaaatctactggttcacagtgtcagagagggagatgacaaaaagatccaa
gtgcaactgctcctgaagattacccgccccaggggaaccattcctacggagtaccaccgt
gtcatctggtgtcccttcatcccagatgactgtgatgatagctccgtgacagagtcctcc
acacaggatgcctccagggtcctggtcctcactcacggagaaaagtcagagatctggaat
gtggacatggtgacgagggagcatggcagtggacccctgtctgtggatgaagtggagttt
gggctgatcagaattgacagccacaccaaggctgtgatggatgctgctttctcccccgat
ggcacagctttggccacggccagtctggacggagaagtcaagttcttccaggtcaacatg
agcgagagcacctccccaagatgcctacaccagtggaagccccatgatgggaaaccgttg
tcctccttgttcttcctggatgatcataggaattctagtgcagatactcagttctggagg
tttgctgtgaccggtgcctgtaacaatcaggaaatcaaaatctggagctgtgagtcttgg
gtgtgtctccaaactttaaggttcatgtgtcccccagatctccccacaaacttcagtgca
gaaccctgcatgaaagctggactggatttgagtgctaagtacttagtgctttctgacatt
aaaagacaggtgctgtatgttttacaaattcaccaagattcagcagcaaacacggcccat
gtaagctctgtgtctgagttcctgctggctcagacttgcctgagctttgccattctagac
gccagcaagaaaaagttcaaaaaggtcacggaagagtctcatttggacgatattacaact
ggtgagttggaccgggaggaaggaggagaggactcggaacacaaacaggaagtgcccacg
gcctcggggatacagatcaagctctacactgtccaccccaaagccctgcaggagttgctg
atacgattccgtccagagtccactgctccccccgcggccaccccatcagtgagcaccata
tcacacgatgacacaggactccaggatgccttgtctgacatgagctttagtctggacagc
agtcggatagacaacaacacgtctctacagcaggaacagcctgtcctactcacccctgaa
gctttctctaccaccagtccaagaaaagatctgtcctccactgatcctgtaagagccagt
ggatcaagcaccagtagcctcacccaagtcacaggactgaatgaagaaatgttctccccc
cacagctctggggatcagtcagtcttgtctgagggaagtacgattacccagaccccaaca
gagaaggaggaccccttatctggaagatactcacacgatctgactccaaccaaactcccc
ccgactggagaaagtctgactagtatagccgaaatcaccacagaggataagccctctgct
ttacagaaagtgtgtgtggacgatttgtttgatagcactcgacagagcttgggacagacc
ctgaacagtaccgactcatcaaccaggcaatccatagaaaacactagcagcaccacaggg
ttcgaggtaggtcagttgggagcacaaaaattgtccacaatgaaggagtcatatgatgaa
aatgacgaggaagtggctgaagttttaggggagtcctacaaagaagaggttgaggaggag
gaggaagtagaagaaagcttggaggatggcccacaaagcacacagccctttgaggaacac
agtggtgacatggaatcggatccgatgcccacctcctggcctaagccacctgatgtcaga
actgagactcaggagatggaggacatacagaatgaagaagtttacaccgaagatgacgat
gttcaagtggaagaagaggaagaagaatccaaggcagagaactatgacaaagatgaagag
gcaggcaatgatatggataacttacaggaaggaagtagtgaagagattgaggaacaaata
gaggaagcaagtgaagaattacagagtcccaaagaagcaccagttgctattccagttgcc
aaagctagggaaatcatcaaagagattcacaccagagaagttataagagaaaatgtggac
aaagatgccattaatgctctgaatgagaacatccagagtatattggcggtgctggaggcc
cagaactctaagatcgagtccctacagtaccagctagtcgagcaacaggagtttcaccga
cagcagatagagagcgacgtggtacctcaacagcctcagaacatagaggaacacctgggc
aaactggagggcattgtcacctcacgggtcgagagaatgttcacacagcacacacagaaa
gagaatcaaagagttagggaactaatacagcagtcggagcagagagataaacagaggcag
gacagactgcagcagatcttgatacagaccatgaacaatgctgtggccagtaacatggag
aaacaagtgcgccaggagatggccaataccatcctacctagtgttacaaggatattggag
cctgtgaaggaacagatgcaccaggaaatcgcccagaaattgacagctactgactccatt
atcagggacagcatagggaagatggtcaggtccaagcaaacaatagaagctctgggagtt
gctgctggaaatgtgttacagaccccaatacagctggcctatcgggaagccttccagaac
attgttgtgcccagttttgatagagccatgcagaacatcttccaacaagtcaatgagact
tttgtgaaaggaacaaaagaaaccaccagacatctagacactcatttgaatgagatccgt
gagaagcatgtggaggcgcgtgacccaatcattgcccagctgcgtaaactgacggacagc
ttccagtcctcggcagactccatacagcagcaggtcctgtccacactacagagcagaatc
aacgcagaaatccagtccgctctctccaatcttgaggagacaatagtgcggtatgtcaga
caggcggtaaaggaggaggtcagtatagcagtcagggagcagggtgccagcatcagtgac
agcgtcctactggccatgagatcaggggcagtaactcctgtccaagtcacccctgacccc
catcaggtccaaactcaaatcctgaatctcctcagacagggccagcttaatacagcattc
cagcaggcactgtcagcatctaatctggacttggttgtgtttgtgtgtgagacagtcaat
ccttcccaggtgttcaatcaaagtccttgccccctacaacagccagttcttctgtctctc
atccaacagctgtcagctgacattggaaataacacagaactcaaacataagtatttggag
gaagctgtgatgaatttggacacctcaaaccctgtaacccagggtcacatgaggggagtt
ttaattggacttatccagaaactgaagacctacataaccgcccaccccaacgacaagaca
acgcggtccttacgcatgttacaaatggcttctgaatcattgctcaaatga
DBGET
integrated database retrieval system
