Magallana gigas (Pacific oyster): 105323009
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Entry
105323009 CDS
T03920
Name
(RefSeq) cleavage stimulation factor subunit 1
KO
K14406
cleavage stimulation factor subunit 1
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105323009
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crg03019
]
105323009
Messenger RNA biogenesis [BR:
crg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
105323009
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
Beta-prop_WDR5
Beta-prop_THOC3
WD40_Prp19
Beta-prop_WDR3_1st
Beta-prop_IFT122_1st
CSTF1_dimer
WD40_CDC20-Fz
WD40_WDHD1_1st
WDR55
Beta-prop_EML_2
Beta-prop_WDR3_2nd
Beta-prop_TEP1_2nd
EIF3I
WD40_Gbeta
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_Aladin
WD40_MABP1-WDR62_2nd
Beta-prop_RIG_2nd
Beta-prop_NOL10_N
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
Beta-prop_VPS8
Beta-prop_WDR75_1st
CFAP251_N
NBCH_WD40
DSE1_N
PAC11
ASA1
eIF2A
Beta-prop_HPS5
Beta-prop_EIPR1
Beta-prop_WDR35_TULP_N
PEP5_VPS11_N
Beta-prop_WDR19_1st
Beta-prop_SCAP
Beta-prop_SPT8
Beta-prop_WDR41
Beta-prop_NUP159_NUP214
Beta-prop_DCAF4
Beta-prop_WDR75_2nd
Beta-prop_NWD2_C
Motif
Other DBs
NCBI-GeneID:
105323009
NCBI-ProteinID:
XP_034299495
LinkDB
All DBs
Position
2
Genome browser
AA seq
433 aa
AA seq
DB search
MIGALGGDSEVKNRELMYRLMISQLFYDGHQQLAVQLSNLVKAHPACPPSDRLFKVVKFG
LESEEELSGSKKIEQNIAPGSGIDLEYETDVQSISPEGALYETCYVTAHKGPCRAGAFHS
SGKLIATGSEDASIKILDVDRMLAKSATPAEIIAMETPQQAMENHPVIRTLYDHIDEVTC
LDFHPTHSILASGSTDYSIRFFEYSKPSVKKAYKSIQEAAPVRCLSFHPSGDFLLVGADH
PTVRLYDVNTFQCFVGRNPSTHHTLPVTTVKWSPNANLYATGSLDGDIKVWDGVSNLVIS
TFKKAHDGEEVCSVTFSRNSKYVLSCGKDSLVKLWELSTNRCLIVYTGAGMTGKMQHGAQ
AVFNHTEDYIFFPDENTTSLCCWDSRNAERQRLLALGHNGAVRYIGHSPTGPAFITCSED
FRARFWYRKADTD
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgatcggtgcattgggcggagactccgaagttaaaaacagagaattaatgtacagatta
atgataagtcagttgttttatgatggacatcaacagttagcagttcagctctctaacctt
gtcaaggcacaccctgcttgtcccccatcagacagactcttcaaagttgtcaaatttggc
ttggaatcagaagaagaactgtctggaagcaaaaagattgaacaaaatattgcgccaggt
tcaggaattgacttggaatatgaaacagatgtacagtcaatatctcctgagggagccctg
tatgagacttgttatgtcacagcccacaaaggcccatgccgggctggggcattccactcc
tcagggaaactcattgccacagggtcagaggatgcctccatcaagatcttagatgtagac
agaatgttggccaaaagtgccacccctgcagaaataattgcgatggaaaccccacaacaa
gcaatggaaaatcacccagtcattagaacactgtatgatcatatagatgaggtcacatgt
ttagatttccatcctacacattctattctggcatcaggcagcacagactacagcattcgt
ttctttgaatattcaaaaccttctgtcaagaaagcttacaaaagtatacaggaggctgcc
ccagtccgctgtctgtcatttcatccctcgggggattttctcctggtgggggcggatcat
cctacagtgaggttgtacgatgtgaacaccttccagtgctttgtgggtaggaaccccagt
actcatcacaccctccctgtcactacagtaaaatggagccccaatgccaatttgtacgcc
acaggctcgttggatggggatataaaggtttgggatggagtcagcaatctggtgattagc
acgtttaagaaagctcatgatggagaagaggtgtgttctgtcaccttctccaggaactca
aagtatgttttgtcctgtgggaaggactccttggtcaagctgtgggagctgtccaccaac
aggtgtctgatagtgtacacaggggcggggatgaccggcaagatgcagcacggggcacag
gcagtgttcaaccacacagaggattacattttctttcctgatgagaacacaacctctctg
tgttgctgggactcaaggaatgctgagaggcagaggttactggccctgggacataacgga
gctgtacgatacattgggcactcccccactggccccgccttcatcacatgcagcgaggat
ttccgtgcaagattctggtacagaaaggcagatacagactaa
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