Magallana gigas (Pacific oyster): 105323254
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Entry
105323254 CDS
T03920
Name
(RefSeq) SWI/SNF complex subunit SMARCC2 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
105323254
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
crg03021
]
105323254
03036 Chromosome and associated proteins [BR:
crg03036
]
105323254
Transcription machinery [BR:
crg03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
105323254
Chromosome and associated proteins [BR:
crg03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
105323254
PBAF complex
105323254
GBAF(ncBAF) complex
105323254
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM
SWIRM-assoc_1
SWIRM-assoc_3
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
Motif
Other DBs
NCBI-GeneID:
105323254
NCBI-ProteinID:
XP_011420609
LinkDB
All DBs
Position
5:4737596..4748309
Genome browser
AA seq
1075 aa
AA seq
DB search
MALTKKKDGSPNVKFFETVETIAQFDSVRTWLNKNYKKYMQADPPTNKNLASLVCQLLQF
MEDAFGKHVSNPALTKLPIRCFLDFKPGGALCHILAAVYKFKSDQGWRRFDFQSPSRMDR
NVEMFLQIEKTLVQNKCLILPTIYIMTDMDKVLLPKLKDIIKRHQGNITEDDEEATHIVH
VLPTHPPTEEEFIRPVMKRDRNAMIHWWYTPDSYDVWVPDVSPDLEIDTPQHGGALEVTA
KWLLDMEEYNEWMNEEDYLIEDEYETRKNKRPKNKVTVEEFIANQESDKREKRDKKSKRK
RSPSPTPAPSSEKKKRKSTRTPGGPGNSKKRLNKEDTDDDLTRDMEDPLPETNIQEVQLS
KQSSSNRSNKDSENQPIKGGTIIDMDEEATDKLIGEDRGDEEGADDDSKREKEDEDNVTE
QTHHIIIPSYSAWFDYNAIHSIERRALPEFFNGKNKSKTPEIYLAYRNFMLDTYRLNPTE
YLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDVDNRATAMGPPPTSHFHIMADTPS
GLQPVNPPKVNQPSAAKQIVSFDDKDKERDTSEGRELSDFSLRMDIYAKKALKDKGAATR
SREWTDQETLLLLEGLEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPFLEESDFGHA
GQSGPLAYQPIPFSQTGNPIMSTVAFLASVVDPRVASAAAKSALEEFSKMKDEVPPALTD
AHVKMVEDANKEGKSLDAEFGLEKSGIAGTVPEKEEGMKAEEAVKEEEEKKEEEEKTEEK
KEEDKEEKKEEAMETDAQDNEEKKEEEKPEKENEEEKAESKTESETKEETEEKKPEEEKE
TEEQIQEKVSKAVAKIPIKPDGNVATAAAAALASAAVKAKHLAAVEERKIKSLVALLVET
QMKKLEIKLRHFEELEAIMDRERDALEYQRQQLLQERQQFHMEQIKAAEHRARQIAMQQM
VTEQRQQNIGAGDQASGPGGPVMTANPSLAAAVGQSYPLSGSPMPPQGPQATQGSPAPPP
PASQPPAAQPVTGTAEGDLSTPASSNDVQAEPMSTDPPQTTVHPPQNMMGTSPVS
NT seq
3228 nt
NT seq
+upstream
nt +downstream
nt
atggcgttgaccaaaaagaaagacggttcgccaaatgttaaattcttcgaaactgttgaa
acaatcgcacaatttgactccgtgagaacatggctgaacaaaaactacaaaaagtacatg
caagcagaccctcccacgaacaagaaccttgcaagtctggtgtgtcagctgcttcagttc
atggaagatgcgttcgggaaacacgtcagcaacccagcgcttacaaagctccctataaga
tgtttcctggactttaagcctggtggtgcattatgccatatcttggccgctgtctacaaa
ttcaagagtgaccaggggtggagaaggtttgactttcagtccccatcaagaatggacagg
aatgtagaaatgttcctgcagatcgagaaaacccttgtccagaacaaatgtctgatcctg
cccaccatttatattatgactgacatggacaaggttcttctaccaaaactgaaagacatc
atcaaacgtcaccagggaaacataacagaggatgacgaggaggcgacacacattgtccac
gtcctgcccacacacccacccacagaagaggagtttattcgtcctgtgatgaagcgtgac
cgtaacgcgatgattcattggtggtacaccccagacagttacgacgtgtgggttccagac
gtgtcccctgacctggaaatcgacacccctcagcacggcggggccctggaggtgaccgcg
aagtggctgctggacatggaggagtacaacgagtggatgaatgaggaggactacctcatc
gaggatgagtatgaaacaagaaaaaacaaacgtccaaagaacaaagtaactgtggaagag
tttatagccaaccaggaaagtgacaagagggagaaacgagacaaaaagagcaaacggaaa
agatccccctcccccacacccgccccatcctcggagaaaaagaaaagaaagagcacgagg
actccaggaggacctgggaactctaagaagaggctaaacaaggaggacactgatgatgat
ctgacccgggacatggaagatcccctcccagagaccaacatacaggaggtccaactctca
aagcagtcaagcagtaaccgtagtaacaaggacagtgagaaccagccaatcaaaggagga
acgatcatagacatggatgaggaggccaccgacaagctgattggtgaggatagaggggat
gaggaaggagcagacgatgactccaagcgagagaaagaggatgaggacaacgtgactgag
cagacccatcacatcatcatacccagctactcggcctggttcgactacaatgccattcac
tccattgagaggcgggcccttccggaattcttcaatggaaagaacaagtcgaaaacgcca
gagatatacctggcctacaggaactttatgctggacacatacagactaaaccccacagag
tacttgacaagcaccgcctgcagaagaaacttggccggggatgtgtgtgccataatgaga
gtccatgctttcctggagcagtggggcctgattaactatcaggtggatgtggacaacaga
gccaccgccatgggccccccacccacctctcacttccacatcatggctgacacaccctca
ggacttcaacccgtcaatccaccaaaagtcaaccagccctcagcagcaaaacagattgtt
agctttgatgacaaggacaaagagagggacacaagcgagggccgggagctctctgacttc
agtctacgcatggatatatacgccaagaaagcactaaaagacaagggagcagccacccgt
tctcgggaatggaccgaccaggagaccctgcttctgctggagggactggagatgtacaaa
gacgactggaacaaagtcagtgaacatgttggcagtcgaacccaggacgagtgtatcctt
cacttcctccgcttgcccattgaggacccattcctggaggagagtgacttcggccatgca
ggtcagtcaggacccctggcgtaccaacccatccccttctcccagacaggaaaccccatc
atgtccactgtggcattcctggcctctgtcgttgatccaagagtcgccagtgcagcagct
aaatcagctctggaggagttttcaaagatgaaggacgaggtaccccctgcccttactgat
gctcatgtcaaaatggtggaggatgcaaacaaagagggcaagtctctggacgctgagttt
ggtctcgagaagagtggcattgcaggaactgtccccgagaaagaggaaggtatgaaagct
gaagaggcagtgaaagaagaggaggaaaagaaagaagaagaagaaaagacagaggaaaag
aaggaggaggacaaggaagaaaagaaagaggaagccatggaaacagatgcccaggacaat
gaagaaaagaaagaggaggagaaaccagagaaagaaaatgaagaagaaaaggcagagagt
aagacagagtctgagaccaaagaggaaacagaggagaagaaaccagaggaagagaaagag
acagaggaacaaatccaggagaaagtcagcaaggcagtggccaagatccccatcaagcca
gacggcaatgtggcaacggctgctgccgcagcattagcgtcagctgccgtgaaggccaag
cacttagcagctgtcgaggagaggaagataaagagtttagtggcattgctggttgagaca
caaatgaagaaactggagattaagttacgtcactttgaagagcttgaagccatcatggac
agggaaagagatgcattggagtaccaaagacagcaacttctacaagagaggcagcagttc
cacatggagcagataaaggctgcagaacaccgagccagacaaatagccatgcagcaaatg
gtgaccgagcagagacagcagaatattggggcaggggaccaagcctcaggacctggaggc
ccagtaatgacagctaaccccagtttggcagcagctgtaggacagagctaccccctgtct
ggctccccaatgccccctcagggaccccaggccacccagggctctcctgcccctccccca
ccagcctcacagcccccggctgcccagccggtcactggcacagcagagggggacctctca
acaccagcctcatccaatgatgtccaggccgagcctatgagtactgaccctccccagacc
actgtccaccccccacagaacatgatgggcaccagtcctgtctcctaa
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