KEGG   Magallana gigas (Pacific oyster): 105323690
Entry
105323690         CDS       T03920                                 
Name
(RefSeq) WD40 repeat-containing protein SMU1
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
crg  Magallana gigas (Pacific oyster)
Brite
KEGG Orthology (KO) [BR:crg00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:crg03041]
    105323690
Spliceosome [BR:crg03041]
 Complex B
  Other components
   Complex B specific factors
    105323690
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_2nd WD40_CDC20-Fz Beta-prop_WDR3_2nd WDR55 WD40_MABP1-WDR62_2nd EIF3I Beta-prop_WDR36-Utp21_1st Beta-prop_CAF1B_HIR1 ANAPC4_WD40 Beta-prop_ACSF4 WD40_Gbeta Beta-prop_WDR90_POC16_2nd Beta-prop_RIG_2nd Beta-prop_EML Beta-prop_WDR75_1st NBCH_WD40 WDR90_beta-prop_4th Beta-prop_Vps41 Beta-prop_Nup120_160 LisH_TPL Ge1_WD40 Beta-prop_TEP1_C Beta-prop_WDR41 Beta-prop_VPS8 Beta-prop_NUP159_NUP214 Beta-prop_DCAF4 Beta-prop_NWD2_C Beta-prop_Aladin WD40_MABP1-WDR62_1st Beta-prop_HPS5 Beta-prop_WDR75_2nd Beta-prop_IFT122_1st Beta-prop_IFT140_1st Beta-prop_SPT8 Beta-prop_WDR19_1st Beta-prop_WDR35_TULP_N Beta-prop_SCAP WD40_RFWD3 Beta-prop_EIPR1 Beta-prop_BBS7 Beta-prop_IP5PC_F PROPPIN VPS8_N DUF7899 LisH_2 DUF7165 Beta-prop_WDR11_2nd LisH_WDR26 WD_LRWD1 Beta-prop_IFT122_2nd Beta-prop_LRRK2 PALB2_WD40 zf_topless LisH_PAC1
Other DBs
NCBI-GeneID: 105323690
NCBI-ProteinID: XP_011421069
UniProt: K1R1B5
LinkDB
Position
4:17105039..17110601
AA seq 513 aa
MAVEIESADVVRLIEQYLKENNLLRTLSILQEETGISLNTVDSVDGFIGDINSGHWDTVL
QAIQTLKLPDNKLIDLYEQIVLELIELRELGAARSLLRQTDPMIMLKHNQNDRFLHLENM
LARSYFDPREAYPEGQTKEKRRNAIAQALAGEVNVVPPSRLLALLGQSLKWQQHQGLLPP
GTTIDVFRGKAAVKEQEEEKYPTQLSKTIKFGQKAHIECARFSPDGQFLVTGSVDGFVEV
WNFTTGKIRKDLRYQAQDNFMMMDDAVLCMCFSKDSEMLATGAQDGKIKVWKILTGQCLR
KFDKAHNKGITSVNFSKDNSQLLSASFDQTIRIHGLKSGKTLKEFRGHTSFVNDAVFTQD
GHHILSASSDGTVKVWNLKTTECQNTFKSLGGTSGMDITVHSVHPLPRQTEQFIVCNRSN
TIVIMNMQGQIVRSFSSGKREGGDFVCAVLSPRGEWIYCVGEDLVLYCFSVTTGKLERTL
TVHEKDVIGISHHPHQNLIATYSEDGLLRIWKP
NT seq 1542 nt   +upstreamnt  +downstreamnt
atggcggtggagatagagtcagcagatgttgttcgacttattgagcaatacctgaaggag
aataaccttctccgaacactatcaattctacaagaagagacgggaatctcattgaatacc
gtggattctgttgatggcttcattggtgatatcaacagcggacactgggacacagtgcta
caagccatacagaccctaaaactcccagacaataaactcattgacttgtatgaacagata
gtgttggagctgatagaattacgagagctgggagcagccaggtcactcctcagacagaca
gaccccatgattatgttaaaacacaaccaaaatgacagattcttacatttagagaatatg
ttagcaaggtcatattttgatccacgagaggcatatcctgaggggcagacaaaagagaaa
agaagaaatgccatagctcaagccttggcaggggaggtaaatgttgtccctccctcccgt
cttctggctttgctgggacagtccctgaaatggcagcagcatcaaggacttcttcctcca
ggtacaactattgatgtgttcagaggtaaagctgcagtcaaagaacaagaggaagagaaa
tacccaacacaactcagtaaaactataaagtttggacagaaggcccacatagagtgtgcc
cggttctccccagatggacagttcctggtgactggttcagtggacgggtttgttgaggtc
tggaatttcaccaccggaaaaatcaggaaagatctgcgataccaagcacaggacaacttc
atgatgatggatgatgctgtgctgtgtatgtgttttagtaaagattcagaaatgctggcc
actggagcacaggatggaaaaatcaaagtctggaaaatcctaacaggacaatgtttgagg
aagtttgataaagcacataacaagggaattacttcagtgaacttctccaaagataacagc
cagctactcagcgcttcttttgaccaaaccatcagaatccatggattgaaatcaggaaaa
actttaaaagaattcagaggacacacttcttttgttaacgatgctgttttcacccaagat
gggcatcatatattaagtgccagttctgatggaacagtaaaggtgtggaacctaaaaacc
acggaatgtcagaacacgtttaagtccctgggcggtacctctggtatggacatcacggta
cacagtgtacaccccctaccccgacagacggagcagttcatagtgtgtaacaggtcaaac
accatcgtcatcatgaacatgcagggacagattgtgaggagtttctccagtggtaagaga
gagggtggggactttgtgtgtgctgtcctgtccccccggggcgagtggatctactgcgtg
ggggaggacctggtgctctactgtttcagtgtcaccactggcaaactagaaagaaccctg
acggttcatgagaaagatgtgataggtattagccatcatcctcatcagaacttgatcgcc
acttactcagaggacggcctactgaggatctggaaaccctga

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