Magallana gigas (Pacific oyster): 105324932
Help
Entry
105324932 CDS
T03920
Name
(RefSeq) RNA-splicing ligase RtcB homolog isoform X1
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
crg
Magallana gigas (Pacific oyster)
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
crg03016
]
105324932
Enzymes [BR:
crg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
105324932
Transfer RNA biogenesis [BR:
crg03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
105324932
Prokaryotic type
tRNA splicing ligases
105324932
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF3368
Motif
Other DBs
NCBI-GeneID:
105324932
NCBI-ProteinID:
XP_065937888
LinkDB
All DBs
Position
4:complement(26911401..26957497)
Genome browser
AA seq
506 aa
AA seq
DB search
MVVRTYNDELKYLEKISNCCWRIKKGFVDNMNVEGIFYTNETLEKLMFDELKQSCRTQGY
GGFLPGMKQIGNVAALPGIVGKSIGLPDVHSGYGFAIGNMAAFDMSNKDAVVSPGGVGFD
INCGVRLLRTNLMEKDVAPLKEQLAQCMFDHIPVGVGSKGIIPMTAQNLEEALEMGMDWS
LREGYAWAEDKEHCEEYGRMLQADPGKVSSRAKKRGLPQLGTLGAGNHYAEIQVVDEIYN
KFAAKKMGIECKGQVCVMIHCGSRGLGHQVATDALVAMEKAMKRDNIKVNDRQLACAKIY
SQEGQDYLKGMAAAANYAWVNRSSMTFLCRQAFAKMFDSTPDDLDMFMIYDVSHNIAKVE
EHFVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTQQGM
DETYGTTCHGAGRALSRAKSRRNLDYTEVLSALEEKGISIRVASPKLVMEEAPKSYKNVT
DVVDTCHMAGISKKAIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggttgtgagaacttacaatgatgaacttaagtacctagaaaaaataagcaattgttgc
tggaggatcaagaaaggatttgtggacaatatgaacgtagagggtatattttatacaaat
gaaactcttgagaaacttatgtttgatgaattaaaacagtcctgtcggactcaaggttat
ggagggtttctcccagggatgaaacaaataggaaacgtggctgctctgcctggaatagtg
gggaaatcaatcggtcttcctgatgtccattcagggtatggatttgctataggaaatatg
gccgcctttgacatgagtaacaaagacgcagtagtctcgcctggaggggtggggttcgac
attaactgtggggtccgcctgctccgtaccaatctgatggagaaagatgtggcccctctc
aaagaacagctcgctcagtgtatgtttgatcacatcccagtcggtgtgggctctaaggga
atcattccaatgacagcacagaatttagaagaggcattagaaatgggcatggactggtca
cttagagaagggtatgcatgggcggaggacaaggaacactgtgaagagtacgggaggatg
ttacaggccgaccctggaaaagtcagcagccgggccaagaaaaggggactaccccagttg
ggaactctgggagccggcaaccattatgctgagatacaggtggtggacgagatctacaat
aagtttgccgccaaaaagatgggcatcgagtgtaagggacaggtgtgtgtgatgatccac
tgtgggagtcgggggctgggccaccaggtagcaacagatgctctggttgctatggagaag
gcaatgaagcgtgacaacattaaagtcaacgacagacaactggcgtgtgccaagatttac
tcccaggagggtcaggactacctcaaaggaatggctgccgccgctaactatgcgtgggtc
aaccgctccagcatgaccttcctctgtagacaggcctttgcgaagatgtttgacagtacc
ccagacgaccttgacatgtttatgatttatgacgtgtcacacaacattgccaaagtggag
gagcattttgtggacgggaaacaaaagactttactggttcacaggaagggctccaccagg
gccttccctccccaccaccccctcattcctgtagattatcagctgactggacagcctgtt
ttgattggaggaaccatgggaacgtgtagctacgtgctgactggtacacagcagggaatg
gatgagacgtacggaaccacgtgtcacggagctggtcgagctttatctcgagccaagtct
cggcgtaatctggactacacagaggtcctgtcagctttggaggagaaaggaatcagtatc
agagtggcttcacccaagctggtcatggaggaggcacccaaatcttacaaaaatgttaca
gatgttgtagatacttgtcacatggcaggcattagcaaaaaggccataaagctacgtcct
attgcggtaatcaaaggctaa
DBGET
integrated database retrieval system
