Magallana gigas (Pacific oyster): 105325218
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Entry
105325218 CDS
T03920
Name
(RefSeq) fibril-forming collagen alpha chain
KO
K06236
collagen type I alpha
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg04512
ECM-receptor interaction
crg04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
105325218
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
105325218
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
crg00536
]
105325218
Glycosaminoglycan binding proteins [BR:
crg00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
105325218
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
VWC
Motif
Other DBs
NCBI-GeneID:
105325218
NCBI-ProteinID:
XP_065942461
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All DBs
Position
5:26678121..26708663
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AA seq
1163 aa
AA seq
DB search
MNSERILWWLCISIIITIEIVSGQRVSENDGLKCQYEGDILTPSICETCRCVNGFYECTF
IENCDEDSKTKEIEKESLTGEASIDATDLADARGPPGGSGVEGPRGRQGPRGDPGLNGGN
GVPGPPGPVGVPEMSADQAYANYYASVYGQGFKAGGAQRPQYMTANMGPYGPRGPPGPMG
PTGQQGLQGPRGEPGDPGPPGQPGSRGPSGPPGNKGLKGSDGNNGEVGPLGLPGRKGPSG
APGMPGIPGMKGHRGLNGINGPSGEQGLPGEKGSMGPPGPPGPPGLQGQRGIPGERGRDG
DRGSNGLNGVDGLPGQVGPPGVIGNQGSPGIPGIPGPKGEAGAPGPKGSAGLQGQRGESG
VPGPQGDEGALGMDGMPGASGEKGSSGDPGPAGVPGFPGTRGPQGIPGSPGLQGPKGASG
QPGQPGYKGERGPRGMSGSSGDRGHPGHPGQEGKRGLRGSIGDPGPQGPPGDRGSMGERG
LPGNVGDPGSPGEEGEPGARGRRGESGPNGEPGRTGPPGPRGPRGAAGRPGLDGMQGPVG
DPGISGNEGRPGEMGPPGNAGAVGIQGPQGPAGSRGPPGRDGNPGGPGPEGPQGDPGPMG
EAGPTGNPGPQGETGDRGPFGNQGPRGYPGAPGLTGLSGEAGKPGEPGPPGAAGLTGRAG
ANGERGFPGDQGVPGLPGESGTPGPIGPAGRDGERGLPGPKGDRGDIGPSGPSGMHGARG
EQGARGPKGEEGEPGEPGPDGAPGRSGPQGAPGPPGDMGPMGLSADPGTQGDAGNPGEPG
PRGSPGGRGPPGEEGASGIPGPPGPSGPLGARGLNGLSGVKGETGDRGISGAPGNRGPSG
ADGIPGRKGERGDRGILGIPGQPGPTGRDGPQGFPGKSGSPGSQGTPGQDGITGMRGEPG
SPGPRGQEGMPGNPGQPGQKGARGEDGAEGPTGPVGPLGNSGEVGLPGDPGTRGERGPMG
PAGAVGLPGEAGKSGSDGAPGKQGPQGPPGNPGSVGNVGSPGNPGPDGAPGITGRTGEKG
PAGEMGQSGPSGLPGFAGPPGVTGATGPSGERGLRGEKGPSGAPGAPGVRGPPGSNGIQG
NSGEKGDNGEEGEKGDPGLMGLNGLLGPEGPPGEPGPMGPPGPLGQAGPTGRRGRPGEEG
QPGAPGHQGPLVCQSLYLCQIFV
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgaatagtgaacgcattctatggtggctgtgtatatccatcatcataaccatagaaata
gtgtccggtcaacgagtatctgagaatgatggattaaaatgccaatatgaaggagatata
ctaacgccatcaatctgtgaaacatgcagatgtgtgaacggattttatgaatgtactttc
attgaaaactgcgatgaagactcaaaaacaaaagaaatagaaaaagaaagtttaacaggt
gaagccagtattgatgcaaccgatttagcggacgcaaggggacccccaggaggcagtggt
gtggaggggccacgtgggcgacagggacctaggggcgacccaggattaaacggaggtaat
ggtgttcccggcccgcccgggcccgtcggagtacctgaaatgtcagctgaccaagcctat
gctaactactacgcctcagtatatggtcaaggttttaaagctgggggagctcaaaggccg
caatatatgactgctaatatgggaccgtacggaccccgtgggccacctggaccaatggga
cccacaggccagcaaggtttacagggaccaagaggagagccgggggatcctggaccccct
ggtcaacccggaagtcggggcccatccggtccaccaggaaataaaggactcaaaggatct
gatggcaacaatggcgaagttggtcctctaggattaccaggcagaaaaggaccttctggg
gccccgggaatgcctgggatacctggaatgaagggtcacaggggtttgaacggaataaat
ggaccttcaggtgaacaaggattgcctggagaaaagggttcaatgggacctcctggtccc
ccgggacctcctggccttcaaggtcaaaggggaatccccggcgaaagaggacgtgacggc
gatagaggttctaatggattgaatggagtggacggtctcccgggtcaagtggggcctcca
ggagtgatcggaaatcaggggtccccgggtattccgggaattcccggaccaaagggagaa
gcaggtgccccgggaccaaaaggttccgctggactccaaggtcagaggggagagagcgga
gtaccgggtccccagggtgacgagggtgctcttggaatggacggcatgcctggtgcttct
ggtgaaaagggctcgtcgggcgatcctggtccggcaggtgttccggggttccccggaacc
agaggaccccaaggcatacctggctcacctggactacagggccccaaaggagcaagcggt
caacccggacagcctggatacaaaggagaacgcggacccaggggaatgtccggaagttcg
ggtgaccgaggtcatcctggacatcccggacaggagggaaagaggggacttaggggatcc
attggagaccctggcccccagggacctcccggcgaccgaggatcgatgggagagagaggt
cttcccggaaatgtcggagaccccggatcaccgggagaggagggagaaccaggagcacgt
gggaggagaggtgaatccggacctaacggtgaaccagggagaacgggtcctcctggtcca
cgtggaccgaggggtgctgccggtcggccaggcttggacggtatgcagggaccggtcgga
gatccgggaatcagtgggaatgaaggacgccccggagaaatgggaccaccaggaaatgca
ggagctgtggggattcaagggccccagggaccggcagggtccaggggacctccagggaga
gacggaaatccaggaggccctggtcctgaggggccacaaggtgaccccggaccgatgggt
gaagcaggaccaacaggaaaccccggaccccagggagaaacaggtgaccgtggccccttt
ggaaatcaaggccccagaggttaccccggagcaccaggattaaccggactatcgggagag
gcgggaaaacccggagagccagggccgcccggagctgccggactcaccgggagagctggt
gccaatggagagcgtggattccctggagaccagggtgtccccggactgccaggtgaatca
ggtacccccggacctatcggaccagcggggcgtgacggcgaaagaggactgccaggacct
aaaggtgaccgaggagatataggaccctcaggacctagcggcatgcacggagctcgggga
gagcagggagcaagaggacctaaaggagaagagggtgaacctggagaacccggacctgac
ggggcaccgggtagatcaggcccccagggagccccaggacctccaggcgatatgggacct
atgggtctctcagctgatcccggaactcagggtgacgctggtaaccctggagaaccagga
ccacgaggatcccccgggggtcggggacctccaggagaggaaggggcgtcgggcatccca
ggacctcccggaccctcaggacctctaggtgcccgtggactgaatggactgtccggcgta
aagggggaaacgggagatcgcggaatttctggcgcacccggtaatagaggaccctcgggt
gcggacggtatcccaggtagaaaaggtgagcgaggagaccggggaatccttggtattcct
ggtcaacccggccccacaggtagagacggtccccagggattccccggaaaatccggcagc
cccgggtcacagggtacccccggtcaggatggtatcacgggaatgcgtggtgaacccgga
tcccctgggcccagaggtcaggaaggcatgcccggcaaccctggacagccaggtcaaaag
ggggcaaggggcgaggatggagcagaggggccaactggtccagttgggcctttgggaaat
tcaggagaagtaggtttacccggagatccaggtacgcgcggagagaggggaccaatggga
ccagcgggtgcagttggtttacccggagaggctggaaaatctgggtccgacggcgcgcca
ggaaaacaaggtccccagggacctccagggaacccagggtctgttggaaatgtgggatca
cccggtaatcctggaccagatggtgcacctggaatcacgggacgtacaggtgagaaagga
cccgccggagagatgggacagtccggaccatccgggttaccagggttcgctggtccccca
ggagtgactggtgcaaccggtccaagtggcgaaagaggattaagaggtgaaaaaggtcca
tctggagcacccggcgcacctggagtacggggaccaccgggttcaaatggaattcaagga
aactctggagagaagggagataatggcgaagagggtgaaaagggcgaccctggtttaatg
ggattgaatggtttactaggacctgagggaccccccggagagcctggaccaatgggaccc
cccggtcccttaggacaagcgggaccaacgggacgacgaggaagacctggagaagaagga
cagcctggcgcacccggacaccagggaccccttgtatgtcaatcactttatctttgtcaa
atctttgtatga
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