Magallana gigas (Pacific oyster): 105325358
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Entry
105325358 CDS
T03920
Name
(RefSeq) uncharacterized protein
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105325358
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
crg03041
]
105325358
Enzymes [BR:
crg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105325358
Spliceosome [BR:
crg03041
]
Complex C
Other components
Step II factors
105325358
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KH_DEAH11
Helicase_C
DEAD
IBR_1
IBR_2
AAA_19
IBR
KH_DEAH11_2nd
RBD_DEAH11
AAA_22
OB_NTP_bind
RRM_1
HA2_C
AAA_30
WHD_HA2
NAT10_TcmA_helicase
nSTAND_NTPase5
Prefoldin_3
Flavi_DEAD
zf-RING_UBOX
ABC_tran
RsgA_GTPase
nSTAND3
RRM_DEAH11
NPHP3_N
AAA_29
Motif
Other DBs
NCBI-GeneID:
105325358
NCBI-ProteinID:
XP_011423179
LinkDB
All DBs
Position
3:complement(12079461..12086315)
Genome browser
AA seq
1712 aa
AA seq
DB search
MADRHPKRQNAGKGKGNQGRGRGTGRNSGDPRRRQPRQPDLTERGGNSKKELHQKNERLL
TKPGPMFNLTVHQPFKEENEFMAYLRQRELPPDLDFEIDSFKPSGFSTLISIHFPSNTAY
KDFITWIRETRKVGFLTHIERVEIARASKEFIEKNLQIIEEKSNHIVALHQEKVLKTKEE
LSTFCGTEQNKKKTKYIPFQEYERKEMHKNKLEEKISELEAQQREFEKSVAKIKKEFEKL
EDRMVKQKEIDQLLLEYDIEYSRLEQALPIYARRTDIVETVLENQVCVLLGETGSGKSTQ
LTQYLLQSKLAKEGRIVCTQPRKVAAASLAQRVASEMKSTVADVIGYQCGIQTKVSADTK
VVYMTDHTLLNECLKDQLMKEYSCIIIDESHERSIYTDILLGMIKKCLHQRPKLRVIVTS
ATINPDVFVQYFNGCPVIRVSGRMYPVDIIWNSYSEEDLEDFERKAVEKTLEIHDKEPPG
DILLFLTGQLEIERCIETLQWELKDRSDHCILPLHGKLQTEEQNKIFKETPQGKRKIVIS
TNVAETSVTIPGVKYVVDTGLAKEMRYDPDKKVNSLKVVKITKSSADQRKGRAGRTSPGK
CFRFYSIEDYNNMSAASVPEILRIHIGHAILKLLQLDVNPIAFDFVEPPPNNSMETAYQQ
LVMLGAVKDGKITNLGKWIAKLPLDPNLGVLVYNAIQKKIGLEAIIIAASCTVSGNLFYR
AGTQEQKDTSDKLKIQFCHSKGDHFTFLNVFKRWHYVEEKEKRQWCLNNSINGRAMRNIR
DTVNEIRFILNKEMKIPIKFELKDITSNEETLQKLLFKAFQANLCYFLGHEKAGYHFIDK
DQQMIIHPSASFQSLALYPKWVIIEKVLNTSREYAVNITEVNEKDVNEALEKGELKFDIT
DIKRKRLQQIHKEYVGQQLQRQFVGPRWKHAKDIEKKLKTENKDSVFVIDADRDKGEVAI
YAPEDKVNASKEALKNSLDPIREKMRNETKKIPIFPRCYKVLIGPGGEIKDLLSENDFNS
VLVYCSDNEFDCDEEMLDWLNQFGGIDEFVKKSPANKNKRYRGEVIFKSSSSAKKAVAAT
REKTSKLQAKLPFWKIDDSGLFKAKLQWCRRKPQPYGFVQIKNEDTLNTILTLCSMVKVS
VGGTQVRISRSREKIDELYVQGINDLVNEDILREGILEAFNISDEDVGRTFIPRKRIHVF
TTPDILDIHRRHLEQQIGQYVDKEKFRVFLRDPGPRDFDFTGYVTFNDPEEGNETCTKLH
NKITISNNVVSVIPEVHSRMYVLERVFKRVEKEIKDFCGKTRKEDRVTIDIKQNSTGNYI
LGIDADNVDKMIKTRYDIQSLLQGQTLDMEAIPSLRRMFSWEGRSKIDKIMGKTHTLIIL
NDRNTSISIHGKESDRSLAIEKIEKHINKLVSSRSRVVDLKGELQPPGLMKRIIQMHGIN
LQGLKNSTHLVSVELDHRKHRIKLLGSEDALEVAVKDIEDITKTLLKANQNNMPSSDPEC
GVCLSVVSESNLYRLESCGHPYCRECVKLHLDSVLSTKDFPLRCCHKGCEMLWTWSDINN
MKNFGFCTLQTLINASVSCYVAKNPDKAKYCITPDCQMVYKVCTEGGSRFVCLLCQAVIC
SRCHVEYHTGQSCAVYERKKQIDEHGLQEWLDRDRLNRDLCPKCYVLIEKHGGCLHMHCT
KCNIHICWLCKAIFESSNECYAHMLENHGTFM
NT seq
5139 nt
NT seq
+upstream
nt +downstream
nt
atggcggacaggcatcccaagcgtcaaaatgcgggcaagggaaagggaaaccagggacgg
gggagaggtactggtaggaactctggagatccgagacggaggcagccaagacaaccagac
ctgacagaaagaggggggaattcaaagaaagagctacatcaaaagaatgaaaggttactt
acaaaaccaggtccaatgtttaatttaacagtccaccaaccgtttaaagaggaaaatgag
tttatggcttacttgcgacaaagagaactaccaccggatctggactttgagattgactct
tttaaaccatcaggatttagtacgttaatttccattcattttccaagcaataccgcgtac
aaagactttattacctggattcgtgaaaccagaaaagttggatttctcacacatattgaa
agagtggaaatcgctagagcaagtaaagaatttattgaaaaaaatcttcagatcattgaa
gaaaaaagtaatcatatcgtagctcttcatcaagaaaaagttctgaaaaccaaagaagaa
ctatccactttttgtggtactgaacaaaataagaaaaagacaaaatatatccctttccaa
gaatatgaacgcaaagaaatgcataaaaataaattggaagaaaagatttctgaattggaa
gcgcagcaaagggaatttgaaaagtcggttgcaaaaatcaaaaaggaatttgaaaagctc
gaggatcgcatggttaaacaaaaggaaatcgaccagttacttttggaatatgatatagag
tattcccgacttgagcaagcattgccaatatatgcacgtcgcacagatatcgtcgaaact
gtcttagaaaaccaagtatgtgttcttcttggcgagacagggtcgggaaaaagtacacaa
ttgacccagtatcttttacagtccaaattagccaaagagggccggattgtttgcacacaa
ccaaggaaagtcgcagctgcaagtcttgctcaacgtgttgccagtgagatgaagtcaaca
gttgctgacgtcattggttatcaatgtggaattcaaacaaaagtttcagctgatacaaag
gttgtgtatatgactgaccatacactcctcaacgaatgtttgaaagaccagttaatgaaa
gagtactcttgcatcataatcgacgagtcacacgagcgaagcatatatacagacattttg
cttggaatgataaagaaatgcttgcaccaaagaccgaaattgcgtgtcattgtgacctct
gcaacaatcaatcctgacgtctttgtacaatatttcaacggttgtccggtaatcagggtt
tcaggtagaatgtatcctgtcgatattatttggaattcatattctgaagaagatttggaa
gattttgaaagaaaagcagttgagaaaacattggagattcatgataaggaaccacctggt
gacattcttctttttttaacagggcagttggaaatcgagcgatgcatcgagacactgcag
tgggaactgaaagatagatcggatcattgcattctaccattacatggaaaactccaaaca
gaagaacagaacaagatttttaaagaaacacctcaagggaaaagaaaaattgttatttca
accaatgtggcagagacttctgtcacaattcctggagtaaagtacgttgttgacacggga
cttgccaaggaaatgcgttatgatcccgataaaaaagtaaattcattaaaagtggttaaa
ataaccaaaagctctgctgatcaaagaaaaggaagagctggaagaacttccccaggcaaa
tgttttcggttttactccatagaagattacaacaatatgagtgcagcgtcagttcctgaa
attcttagaattcacataggccacgccattcttaaattattacaacttgacgtaaatccc
attgcctttgatttcgtagaaccacctccaaacaattctatggaaacagcttatcagcaa
ttggtaatgttaggggcagtcaaggatggaaaaattactaatcttggaaaatggattgca
aagcttcctttggatccgaacttgggagtccttgtttataatgctattcaaaagaaaatt
gggttggaagcaataattattgcggcatcgtgcacagtgagtggaaatcttttctacaga
gcaggaacacaggaacagaaagatacgagcgataaactcaaaatacaattttgtcacagc
aaaggagatcatttcacgtttcttaacgtctttaaacgttggcattacgtagaagaaaaa
gaaaaaagacagtggtgcttaaataactcgataaacggaagggctatgcgaaacattcga
gatacggtcaacgaaatcagatttattcttaataaagaaatgaaaataccaatcaaattt
gaactgaaagatattactagtaatgaggaaacgttacaaaaacttttattcaaagctttt
caagcaaatctctgttactttctcggacacgaaaaagctggttaccattttattgacaaa
gatcaacaaatgattattcatccgtcggcatcttttcaatctcttgcattgtatccaaaa
tgggtaattatagagaaagttttgaacacttcacgagaatatgctgtaaatataacggaa
gtgaatgaaaaagatgtcaatgaagctttagagaaaggagaactaaaatttgatatcacc
gatattaagaggaaacgtctacaacaaattcataaagaatatgtgggacaacaactccaa
agacaatttgttggtccaagatggaagcatgcaaaagacattgagaagaaattgaagact
gaaaacaaagattcagtatttgtcatcgacgctgatagagacaaaggggaagttgcgata
tatgcaccagaagataaagttaacgcctcaaaggaggcactgaaaaattcactggatcct
ataagggagaaaatgcgaaacgaaacgaaaaaaatccccattttcccaagatgttataaa
gtattaataggaccaggtggggaaataaaagacttattgtcagaaaatgattttaattcc
gttttggtttattgctcggacaatgaattcgattgtgatgaagaaatgttagattggctg
aatcagtttggtgggattgacgagtttgtaaaaaagtcccctgctaataaaaataagagg
tatagaggagaagttatttttaaaagtagtagttctgcgaaaaaggcagttgcagctacg
cgcgaaaaaacatcaaaacttcaagcaaagctacctttttggaaaatcgatgactcgggc
ttatttaaagccaaacttcagtggtgtcggagaaaaccgcaaccgtacgggtttgttcag
attaaaaacgaagacacattgaacacaattttgacactttgttccatggttaaagtgtca
gtgggtggaacgcaagttaggatcagtcgaagtagggaaaagatcgacgaattatatgtt
caaggcatcaatgatctagtcaacgaagatattttgcgagaaggaatacttgaagctttt
aatatatcagatgaagacgtcggaagaacttttataccgcggaaaagaatacatgtattt
acaactccagacatcctggatattcacagaagacatttagaacaacaaattggtcaatat
gtggataaagagaagttccgagtttttctccgcgaccctggtcctcgtgactttgatttt
acagggtatgtcaccttcaacgacccagaggaaggtaacgaaacctgcacaaaacttcac
aataaaattaccataagtaataacgttgtctctgtaattccggaggtccattcacgtatg
tacgttttggagcgtgtgttcaaacgtgttgaaaaggaaatcaaagatttttgcggtaaa
acaagaaaagaagatagagtgacaattgatataaaacaaaattcgactggaaattatatt
ctagggatagatgcagacaatgttgacaagatgataaaaacaagatatgatattcaaagt
ctccttcaaggtcaaactttagatatggaggctattccatcgttgagacgcatgttttca
tgggaaggtagaagtaaaattgataaaatcatgggaaagacccacaccctgataattcta
aatgacagaaatacgtcaatctccatccatggtaaagaatccgatcgctcattggctatt
gaaaaaattgaaaagcacatcaataagctggtttcctcaaggtcacgggtagttgacctt
aaaggcgagctgcaaccgccaggtttgatgaaaagaataattcaaatgcatggtataaat
ttacaaggattgaagaatagtacacatcttgtaagtgtagaacttgatcacagaaaacat
agaataaagcttcttggatcggaagatgccttagaagtggcagtgaaggacattgaagac
ataacaaaaactttactgaaagcgaatcaaaacaatatgccatcgagtgatccagagtgc
ggagtttgccttagtgtggttagcgaaagtaacttatatagactagaatcatgtggacat
ccgtattgcagagaatgtgtaaaactgcatctcgattcggtactgagtaccaaagatttc
cctctccgatgctgtcataaaggctgtgaaatgctatggacatggagtgatatcaacaat
atgaaaaactttggattttgcacgttgcaaaccttgataaatgcatccgtttcttgttat
gtagcaaagaacccagacaaagcaaaatattgcatcacacctgattgccaaatggtctac
aaagtatgcacggaaggaggaagtaggtttgtttgcttactttgtcaagcagtgatatgt
agtagatgccatgtagagtaccatacaggtcaatcttgtgcagtgtacgaaagaaagaag
caaattgacgagcatgggcttcaagaatggctggaccgtgatcgcctaaatcgtgatctc
tgcccgaagtgttacgtgttaatcgaaaaacatggtggctgtctgcatatgcattgcaca
aaatgtaatattcacatctgttggttgtgtaaggctatttttgaatctagtaatgagtgc
tatgcccatatgttggagaatcatgggacttttatgtga
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integrated database retrieval system
