Magallana gigas (Pacific oyster): 105326365
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Entry
105326365 CDS
T03920
Name
(RefSeq) TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L
KO
K03131
transcription initiation factor TFIID subunit 6
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
105326365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
crg03021
]
105326365
03036 Chromosome and associated proteins [BR:
crg03036
]
105326365
Transcription machinery [BR:
crg03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
105326365
Coactivators
SAGA/TFTC/STAGA complex
105326365
Chromosome and associated proteins [BR:
crg03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
105326365
STAGA complex
105326365
TFTC complex
105326365
SAGA complex
105326365
SLIK complex
105326365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF6_C
TAF
TFIID-31kDa
CBFD_NFYB_HMF
Motif
Other DBs
NCBI-GeneID:
105326365
NCBI-ProteinID:
XP_011424660
LinkDB
All DBs
Position
6:complement(43349859..43356263)
Genome browser
AA seq
802 aa
AA seq
DB search
MAEIKEEKKTAVVDDKRYAIITRESIKMMAESVGISELCDEAAAMLCEDVSYRLKEATQN
SIQYMKHAKRKRLTTEDFNKALKRSSVQPVSGHRCQDGVNFRQLKEAEIFFTDDEDVELC
DVGLEDCTPCEQGETSIKAQWLAVEGISKTSSLSQGKPIKQENNDILQKYYDSITKAVLG
NDLKLMKAALQDLRTNPNISSLLPCFVNFVSNGVKTVSHDVSQMTRLLYTVKALISNTSL
FLEPQSYLNPLVQGVSYCLLESLAASINPSNDHWMLRDYAARVLAQIVHTWSSPINHLMH
TTIRSLKEVLCDHTKPFCCHYGAVMGIKALGPQVIDDVLVPQLPVYWPHLSSVLEDNSFS
NALTKADAFKVYGALLASVELLICTQMKQYEDLLKQKYEEMEFSELLNEEASAKMKDCLP
DIQHSISKLYTDMYGYFGDRMTKCLQDFNEKFNLKQKVFTPKFKEKLISLSDADASKSGD
ELLKEFMEQVKLQQQLDKEKAEKERIQRLINEEKRERDRKHFEEHQRLMEAGKKRLEEIR
LAEIEREREEMERLNHETRRNKKVAEERISKMLKEDSDDDFGEDAVIPYRRVRKRTKSQV
QYFPTESPESNDDDPSYSLPGTSKGIDQKKGIKLKIITRPGKLPNVKIEAQAKEMKKSSP
HSYPTKVSPHHKEQKYSPKLSPHVHREAKNSPHSSKDKSSPHTHKDSPLYYAHKDSPAPE
LKYSHHSSLPQDPSETKHGKKRKASQKRKDEFEFESDPEDFPPMSFKPSYNSSEGESSEG
AELRKPIKMKLKVKDSKELPSD
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atggccgagatcaaagaggaaaagaaaacagcggtggtggatgataaaagatacgctatc
attacaagagagagcatcaagatgatggctgaatccgttgggatcagtgagttgtgtgat
gaagcagctgccatgctctgtgaagatgtctcttacaggctgaaggaagccacacagaat
tcaatccagtacatgaaacatgcaaagaggaaacgactgacgacagaggacttcaataaa
gctttaaaaaggagcagtgtacagccggtaagtggacacagatgccaagatggagtgaac
tttagacagctaaaggaagcagagatttttttcacggatgacgaagatgtagagttgtgt
gatgttggtctcgaagactgtacaccatgcgaacaaggggagacctctataaaagctcaa
tggttagctgtagaaggcatatcaaaaacttcatctctgtctcaaggaaaaccaataaaa
caagaaaataatgacatcttgcagaaatattatgacagcattaccaaagctgttttgggg
aatgatctcaaattaatgaaggcagctctccaggatctacgcaccaacccaaacatttcc
tccttgcttccttgctttgtcaacttcgtctctaatggggtgaagacagtgagtcacgac
gtctcccagatgactaggttgctgtacacagtgaaggctctgatcagtaacaccagtctg
ttcctggagccccagtcttatttaaatcccttggttcaaggagtcagttattgcctttta
gagtcattagcagcgtccattaacccatccaatgaccactggatgctgcgtgattatgct
gctcgagtattggcccagattgttcatacatggtctagtcccatcaaccacttgatgcac
accaccatcagaagtctaaaggaagtcctctgtgatcacactaagcccttctgctgtcac
tatggggctgtcatgggaattaaggctttaggaccacaggtgatagatgatgtcctcgtt
ccacagctacctgtatattggcctcacctgtcctcggtcctcgaggacaattctttctct
aatgccctcacgaaggctgatgcattcaaagtttatggagctttactggcaagtgttgaa
ttgctcatttgtactcaaatgaagcaatatgaagacctgctgaaacaaaaatatgaagaa
atggaattttctgaacttttgaatgaggaagcatctgctaagatgaaggattgtttacca
gacatacagcattccatttcaaagctatacactgatatgtatggatattttggggacaga
atgacaaaatgtttacaagacttcaatgaaaaatttaatttaaaacagaaagtgttcact
ccaaagttcaaagaaaagcttatttctctatctgatgcagatgcatctaaaagtggagat
gagctattgaaagagtttatggaacaagtgaaattgcagcaacagttggataaggaaaag
gccgaaaaagaacgcatccaaagactgatcaatgaggaaaaacgagaaagagatagaaag
catttcgaagagcaccagcgattaatggaggcaggcaagaaaagactagaagaaataaga
cttgctgaaattgaaagagagcgtgaagaaatggaaagactgaaccatgaaacaagacga
aacaagaaagttgctgaggagagaatctcaaagatgctaaaagaagacagtgatgatgat
tttggtgaagatgcagtcattccctatagacgtgtcagaaagaggactaaaagccaagtg
cagtatttcccaacggaatctccagagagcaacgatgatgatccttcatattccttacct
gggacatcaaaaggcatcgatcaaaagaaagggattaaacttaaaatcataactcgccca
ggcaaactgccaaatgttaagatcgaggctcaagcgaaggaaatgaaaaagtcttcacct
catagctatcccaccaaagtatccccacatcacaaggagcagaagtactccccaaagttg
tctccccatgttcacagagaggcaaaaaattctccccactcatcaaaggacaagtcatcc
cctcacactcacaaggactcgcctctttattacgctcataaagactcgccagctcctgaa
cttaagtactcgcatcactcgagtttgcctcaagaccccagtgaaacgaaacatggcaaa
aaaagaaaagccagtcaaaaacgcaaagatgagtttgagtttgaatctgatcctgaggat
tttccccctatgtcttttaaacctagttacaattcgtctgaaggtgaaagttcagaaggg
gcagagctaaggaaacctatcaaaatgaaactgaaagtaaaagactccaaagaattgcca
tctgactga
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