Magallana gigas (Pacific oyster): 105326426
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Entry
105326426 CDS
T03920
Name
(RefSeq) X-ray repair cross-complementing protein 5
KO
K10885
ATP-dependent DNA helicase 2 subunit 2
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
105326426
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
crg03400
]
105326426
DNA repair and recombination proteins [BR:
crg03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
105326426
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ku
Ku_PK_bind
Ku_N
Ku_C
VWA
VWA_2
Motif
Other DBs
NCBI-GeneID:
105326426
NCBI-ProteinID:
XP_011424766
UniProt:
K1Q7H0
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Position
5:3692074..3702041
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AA seq
729 aa
AA seq
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MAANKEAIAIVLDVGPSMNNAPPGEETPLQTAVDAIKMIIQRKMFSESKDEVSLVLFGTP
DTDNPLADGDSYENVTISRPLGVVDFDFLQQVQNDITPSNTSADFVDALVVALDHLVNAT
QGKKGFAMKRLILLSDLGGEFGDDQIEAIISGIKNSGTELNVIGPDINLDGDEDDDDSQR
PGPSGAANGHQKARTPQQKAGEGMLKRILEEVEGECYSFSEALPALSHFQMRQVRPTPWK
VQLEITSNIRIPVCSYIKIKDFKVKSFKKVYAKDEDAEIDNLRTYHKNDEEETEVEKEDI
VEGHRYGTTLVPMSEDDKLNMKYKAEKCLKALGFTDAQNIKRHHFMGDNTHYVVADKDDE
TAVVALSALINALYETNMAVVVRKVYSAATAPKLGCLLPHIKSSYECLIYVELPFREDIR
QYTFGSLPLKQDTEANKKYRPTDAQLDAINDLINESDLSQAAEDEDGEKTEALKPKLIFN
PYFQRLYQCLQHRALEPHEPLPELSPMIANSLNPPQEVSARCEAQCEKLKNLFKLEKVKK
EDRKTGENMFKQKEEDEPSAKKIKIDDDLGGGLADITKAEVTEVGTVTPVDDFISLINQK
DADKFEEASGQMQKRVEHLVTDSFGPQFYGKALDCLKALRQQSIKKSEPTLYNNFMKKFK
DFLIEKGRRDFWEMIVDDKQALITKTESEDSSVSLGEAKDFIAEKVEAVKAESQPPAAGD
DAEDLLDQI
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atggcggcaaataaggaagccatagcaattgttctggacgttggtccatctatgaataat
gcgcccccgggcgaagagactccactgcagactgcagttgatgccatcaagatgataatt
caaagaaagatgttttccgagtccaaggatgaggtaagtctggtgttgtttggtacacca
gatacagacaaccccctggctgatggcgatagctatgagaatgtcacaatctctaggccc
ctgggggtggtggactttgattttcttcaacaagttcagaatgacatcactccaagcaat
acttcagctgattttgtggatgccttagtggtagccttggaccacctggtaaatgctaca
caaggcaaaaagggctttgctatgaagcgccttattttgctgtcagatcttggaggggag
tttggagatgatcagatagaggcgattatatctggaataaaaaactccggaacagaactt
aatgtgattggtcctgatatcaaccttgatggtgatgaagacgatgatgacagccagagg
ccggggcccagcggagccgctaacggtcaccagaaagcccggacaccccagcagaaggcc
ggggaggggatgctgaagaggatactggaggaggtcgagggggagtgttacagcttcagt
gaggccttgccagccctgagtcatttccagatgaggcaggtccgccctactccatggaaa
gtccagctggagatcacatccaacatccggatccctgtctgttcctatatcaagatcaaa
gatttcaaagttaaaagttttaagaaggtgtacgccaaagatgaggacgcagagatagac
aatttgagaacataccacaaaaacgacgaagaggagacagaagtggagaaagaggacatt
gtggaaggtcacagatatgggactaccctggtgccaatgtctgaagacgacaagctgaac
atgaagtacaaggcggagaaatgtctaaaggcgctgggatttacagacgctcaaaacata
aagcggcaccattttatgggggacaatacccactatgtggtggctgataaagatgacgag
actgccgtggttgccctttctgcactcatcaatgccctgtatgaaaccaacatggcagtg
gtggtgagaaaggtatacagtgctgccactgcgcccaaactcggctgtctgctgccacac
atcaagtcatcgtacgagtgcctgatctatgtagagctgccctttagagaggacatcaga
cagtacacttttggatctctaccgctcaagcaagacactgaagctaacaaaaaatacaga
cccacagatgcacagttagatgctattaatgatttaattaatgagagtgacctctctcaa
gcagctgaggatgaagatggtgaaaaaacagaagcactcaaaccaaagttgatatttaac
ccatatttccagagactctatcagtgtttacaacatcgagctttggaaccccacgaacct
cttcctgagttgtctcccatgattgccaattccctgaatcccccacaagaggtctctgct
agatgtgaggcacagtgtgaaaaactcaagaacttgtttaaattggaaaaagtgaaaaaa
gaggataggaaaactggagaaaacatgtttaaacagaaggaggaagacgagccgtcagca
aagaagatcaagattgatgatgacttgggtggtgggctggcagacataacaaaggcagag
gtcacagaggtgggcacggtgactccagtagatgactttatttcacttatcaaccaaaaa
gatgcagacaagtttgaagaagcatctgggcagatgcagaagagagtagaacacttggtg
accgactcctttggtccacagttctatggcaaagcactggactgtctgaaggccctcaga
cagcagtccattaagaaatccgaaccaacattgtacaacaattttatgaaaaagttcaag
gactttttgatagagaaaggaaggcgagatttttgggaaatgattgtagatgataaacaa
gctctgatcaccaagacggagagtgaggatagctcagtgagtctgggggaggccaaagac
ttcatcgcagagaaagtggaggcggtaaaggcagaatcacagccgcctgccgccggggac
gatgctgaagacttattggaccaaatctga
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