Magallana gigas (Pacific oyster): 105326948
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Entry
105326948 CDS
T03920
Name
(RefSeq) receptor-type tyrosine-protein phosphatase delta isoform X1
KO
K06766
neogenin
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
105326948
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
crg04515
]
105326948
Cell adhesion molecules [BR:
crg04515
]
Immunoglobulin superfamily
DCC/UNC5 family
105326948
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
FN3_DSCAM-DSCAML_C
Pur_ac_phosph_N
Interfer-bind
Fn3_R-PTP-O
Tissue_fac
Fn3_VIN3
CRLF2-like_D2
Ig_3
I-set
Ig_J_second
ig
Motif
Other DBs
NCBI-GeneID:
105326948
NCBI-ProteinID:
XP_065944813
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All DBs
Position
1:23107557..23125015
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AA seq
1334 aa
AA seq
DB search
MRRTLIVFSLLLGFSESSLGPYRYLSTPKDIHADVICNRQLPDQCDVNLTWPEVHYKKSW
KPLLYIIKRDSSADSTSTTEETGVNTLLVKGLGKEKTFNFIVKAKQGWLLSDWSETLHVT
TSTPPVVKRGDNGDDDAKYPKPRGLKVKFISPIGFKLKWRDPKDAKTLDVKGYRVTWKQK
KGQTFKSKVITRRSYSLKGLKAESTYLFRVQTVYASKVSKSLSLFCKTQKEHGVLSPSNF
KAKAIGTTKIRLTWTPQKKPTVKLTGYKIQYKRRGVQRGDMCSAKASPWKSNYVISDLLK
GEFYKVRIAAFSRYTTGAYTPWIVVKLPGKRNNERDGDVDTSVTETVPRSPEELFNLKIE
QISGGVNITWNDISSEVVTYLVEITQDSHILYIKEIYGDPIALEVYSLDPGQEFNVTIQG
VTSKSKKEASVTTPFKTPVPVTVVTEGAHVTLVGGNVTLRCIVQGTPQPHYEWVLGQGFT
HYDVTRFEEDSFDKYLLLLELYNIPEDFQNPTCHAQNAFENVTQEHSIVVTGPIPSPVVN
VTVRAMTSRKIEVEWETTIEHEYLNVTYIVTLSDVNGRYRREEEVALNRCVIRNLTESTE
YRIYVVAVTPEGLRSSESDVISVVTEKSLPKPTLHTLFWNDTVIALNWFTNSSTAPDLFK
VFYKRKTDTDFRVRKAFPPTSTMLLQDLRKRSTYDIKVMAVYGRYDVASDVITVETIPEN
FFLENRRPTPPADAFLMVNKTSMTVRWLPPHPEYMTHIRQYRLDIYQGGVLQRHLTDNRG
RNYTLTDFDDTQEATVYLTAVNNAGASDPILRIYKPLADDDDSRQTGAVGNLRGKPLSSN
SILLEWDPPTNKRLARFLLRYRPLEYNDSNIVDKWLGPSYNNYVLTGLSGPESYFISIIP
YFNEKVGNDSSIVVRTLAGAPVATPQNLTVDRVNYTEIALHWSPPPEPPRSGAITEYIVG
YRTSDTARDSVQYSNDTKVILGDLLPDTTYYVRVAALTFNETGPYTTWLTATTPPLPVVK
EPPAPPIHFTTKQVPYGITLHWQRPERLEVPVNGYIVGYGRFIPEVYREILGANKNQYTI
HKLRQNHEYIVSVRAFNNFGESEPVIAVATAGDGKMSIVPLIDNDVDKSDDDIQFDDAPQ
NVSLELNHGEIPTVNVRWFPPAQLQGQLLGYNVYYKKQGEKRWTVMFADRTTFLVLRNLS
FDSTYYVRVNVHYSDGVKAKLSRTAVIKTFSLEDTIHALPTPSITSVFSGTNFLDVNWKP
PLKDYLHVIVGFILGFGTRKPNENQEFISASQRSFRIENLKPNTTYLISLAMFNEHGKSA
KSIVNATTSAVYED
NT seq
4005 nt
NT seq
+upstream
nt +downstream
nt
atgcgaagaactctgatagtgtttagtttgttattagggtttagcgagagctcgttaggg
ccctatagatacctgtctactccaaaagatatccatgctgacgtcatttgtaacagacaa
cttccggaccaatgtgacgtgaacctgacatggccggaagtgcattataagaagtcatgg
aaaccattgctgtatatcataaagcgggatagctcggcagattctacatccaccacagag
gagactggggtcaatactctccttgtcaaaggcctcggaaaagaaaaaacatttaacttc
atcgtcaaagcaaaacaaggctggttgctcagcgattggagcgaaacacttcacgtgaca
acatcgacgccacctgtcgttaaaaggggagataatggagatgatgatgctaaatatcca
aaacccagaggattaaaagtcaagtttatttcgccgattggcttcaagctgaaatggcga
gacccaaaagacgcaaaaacactagatgtcaaaggttaccgagtgacctggaaacagaaa
aaaggccaaacgtttaagtcaaaagtcataacgaggcgatcgtattctctaaaaggattg
aaagcagaatccacgtacttgttccgcgtccagaccgtgtacgcatccaaagtgtcaaag
tccctgtctttgttttgtaagactcagaaagagcacggggttctctccccttccaatttt
aaagcgaaagccatcgggacaacgaagatccgcctgacttggaccccccagaagaagccg
accgtcaagttgaccgggtacaagattcagtacaagagacgcggggtgcagcggggggat
atgtgctcagcaaaggccagtccctggaagtccaactacgtcatctcagacttgctgaag
ggagaattctacaaagtcagaatcgccgcgttttctcggtataccacgggagcctatacg
ccatggattgtagtcaaacttccgggaaagcgcaataacgagcgtgatggcgatgtggat
acttccgttactgaaactgtgccacgtagcccagaagaactttttaatctaaaaatagaa
cagatttccggcggggtaaatattacatggaatgacatttctagcgaagtagtgacgtat
ttggtggaaataacgcaagattcccatatattgtacataaaggaaatctatggggatcct
atcgctctcgaggtgtatagccttgaccctggtcaagagtttaatgtcacgatccaagga
gtcacttctaaatctaaaaaagaagccagtgtgacaaccccgtttaaaacccctgttccg
gtgactgtcgtcacagaaggagcccacgtgactttagtgggcgggaatgtgacgttgcga
tgtatcgtacagggcacgccgcagcctcattacgaatgggtgctgggacaagggtttact
cactatgacgtcaccagatttgaagaggacagcttcgacaagtatcttcttctcctagag
ttatacaacattcccgaggatttccaaaatccaacatgccacgcgcaaaatgcatttgaa
aacgtaacacaagaacacagcatagttgtaacaggtccaattccatctccggttgtaaac
gtcacggttcgagcgatgacgtcaagaaaaatcgaagtcgaatgggaaaccacgatcgaa
cacgaatatctgaacgtgacgtacatagtgacgttatcagacgtcaatggaaggtatcgg
cgagaggaggaagtagccttaaatcgttgtgtcattagaaatctcactgagagtaccgaa
tacaggatatacgtggttgcggtgacacccgaggggctacggtcaagtgaaagtgacgtc
atttccgttgttacagagaaatcgcttccgaaacccacactccatactcttttttggaat
gatacggtcattgcgctgaactggttcacaaactcctcgactgcaccagacctgttcaaa
gttttctacaagagaaaaactgacacagacttccgagtcagaaaagcgtttccacccact
tctacgatgcttctacaagatttacgtaagcggtcaacctatgacataaaagtgatggca
gtgtacggaagatatgacgtagcttctgacgtaataacagttgaaaccatccccgaaaac
ttcttcttggaaaaccggcgacccacgccccctgctgatgcctttctgatggtcaataag
acgtcgatgacggtgcgctggctgccgccccaccctgagtacatgacccacatacggcag
tacagactggacatctatcagggcggtgtcctacagcgacacctaacggacaacagggga
cgtaactacactttaacggattttgacgatacgcaagaggcgacagtatacttaacggca
gtcaacaatgcgggggcgagtgacccaattctcaggatttacaaacctcttgcagacgac
gatgactcgagacagacaggtgcagtaggaaacctcagagggaagccgctgtcttcaaat
tcaattcttctagagtgggacccgcccactaacaagcgattggccagatttctgctgagg
taccgccccctcgagtataacgattcgaacatcgtcgacaaatggctgggcccgtcttat
aataactacgtgctgactgggctaagcggcccagagtcgtactttatctctatcatcccg
tactttaacgagaaagtgggcaatgattcgtccattgtagtgcgcaccttggctggcgca
cctgttgccacgccccaaaatctgaccgtcgacagagtgaactatacggaaatcgcccta
cattggagcccccctcccgagcccccaaggagcggggccatcacagagtacatcgtgggt
taccggacatcggacacagccagggactctgtccaatacagtaatgataccaaagtcatc
ctcggggacttactaccagacacaacgtattatgtgcgagtcgctgccctaacttttaat
gaaacagggccgtatacaacatggctgacagcaacgactcctcctcttccggttgtaaag
gaaccaccggcaccacccatacattttaccacgaagcaggtgccctatggaatcacatta
cattggcagagaccggaacgactagaggtccctgtcaatggatatatcgtaggctatgga
aggttcattcccgaggtgtaccgagaaattcttggcgccaataaaaaccagtacaccatt
cataaactcagacaaaaccatgaatacattgtgagtgtgcgggcgttcaacaattttggg
gagagcgaacctgtgatcgctgtggccacggcaggtgacgggaagatgtcgattgttcca
ttgattgataatgatgtcgacaagagcgacgatgatatccagtttgatgacgctccgcag
aatgtgagcctcgagttgaatcacggggaaatcccaacagtgaacgtccggtggttccct
ccagctcagctacagggacagttactgggttataacgtgtattataagaagcagggcgag
aagagatggacggttatgtttgcagacagaacaacgttccttgttctcagaaacctctct
ttcgactcgacgtattacgtcagagtaaacgttcattacagtgatggcgtcaaagccaaa
ctttcccggacggccgtcatcaaaacgttttctttggaggatacaatccatgctttgccc
actccaagcatcacatcggttttctccggaacaaactttttagacgtgaactggaaaccg
cccctcaaagactatcttcacgtgatcgtgggatttattttaggatttgggacgcgaaaa
ccaaatgaaaaccaggagtttatttctgcgagtcagagaagttttagaatagaaaaccta
aagccaaatacaacgtaccttatttccttggccatgtttaacgaacatgggaagagtgcc
aagtcgattgttaatgctacaacaagtgcggtctatgaggactaa
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