Magallana gigas (Pacific oyster): 105327613
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Entry
105327613 CDS
T03920
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1 isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
crg
Magallana gigas (Pacific oyster)
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
crg03021
]
105327613
03036 Chromosome and associated proteins [BR:
crg03036
]
105327613
Transcription machinery [BR:
crg03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
105327613
Chromosome and associated proteins [BR:
crg03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
105327613
SLIK complex
105327613
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_Hrp3
CDH1_2_SANT_HL1
Helicase_C
CHD1-like_C
Chromo
ResIII
HDA2-3
DEAD
Myb_DNA-binding
Motif
Other DBs
NCBI-GeneID:
105327613
NCBI-ProteinID:
XP_034324831
LinkDB
All DBs
Position
6:51854764..51876559
Genome browser
AA seq
1821 aa
AA seq
DB search
MSKPSIEDPADFDSPLFGPLSNDKSPKAGSSNKENKDSIKKEIENNASGSGSDSGNSSSG
SSSDESDSESGSRSGSNSETSSSESDDSESNERSERKTASHLDDDSQDTQSTNLSSKRGR
PRKSSINDIKQILREMSDDPDLLGLRRSGRAKKEPVRYNALGDSDTDDKPRRKGGRKGSD
DWNASDSGSGESSDDYKPSSRALSRPGGRRNLRAAPPRRGRQATSNLSDSDESNSEEDTR
SSSRIYSNKKIRRDYTTRRKGTKSKVSYKEDSDDQTDSDDIIEVTQDQMEAEEEDDNKEI
IEKVLDDRIGRVTATGSKTTIYNVQDNGDPNDGVDPATEETEKQFLIKWKNWAHIHNTWE
SYKTLKEQKVHGLKKLDNYIKKQDEIREWKDQATPEDIDYFECQQEMVQELYQQHMHVER
IIAHSNQKMANENNGYPDYLCKWEGLPYSECTWEEGELVSRKFQVLVDEYNVRNKSQRTP
TPAKYCKALRYRPKFAPLKNQPSFLGGENNQLVLRDYQLDGVNWLMHTWSKENSVILADE
MGLGKTIQTIGFLSILYNTFQVYGPNVLVVPLSTIAAWQREFKLWAPEMNVVIYLGDISS
RNKIREHEWCHSGNKRLKFNVLVTTYEILLKDKSFLGSVNWATLIVDEAHRLKNDDSLLY
KTLFEFNSNHRLLITGTPLQNSLKELWALLHFIMPDKFYKWADFEEKHSSAQKTGFVNLH
KELESFLLRRVKKDVEKSLPAKTEQILRVEMSSIQKQYYRWILTKNYKALSKGLKGNVSS
FVNIIMELKKCCNHSQLIRPPEEEFSDRLASLVKGSGKLILLDKLLLRLKESGHRVLIFS
QMVRMLDILAEYLQMRHFQYQRLDGSVRGDLRKQAMDHFNAEGSEDFCFLLSTRAGGLGV
NLATADTVIIFDSDWNPQNDLQAQARAHRIGQKNQVSVYRLVTKNSVEEDIVERAKRKMV
LDHLVIQRMDTTGRTVLNRGIPSSNSTPFNKDELTSILKFGAEELFKENDEDEDEPQVDI
DEILKRAETREVEENNTGVGDELLSQFKVVSFDNMEDEEIEQTPGTRTEEEDKSWDSIIP
EADRRKIEEEEEQKRLLELNLPPRSRKSLQQPQVGDDSDDNSRRKGKRNVDDEDSEEDDD
DDEDDDDQPRKRGRPKMSKTSVRGFNDSEIRRFIKSFKKFGRPMTRLDAIACDAELQEKS
ESDLQRLAEILIRNCEQAIEEAKNKTEQDNNEGGKKGNRGPSCKISSVSVNAQAIVKAGQ
ELEPLAATIPADADERKRYQLPFKAKAVHWDCIWDVEEDSNLLKGIYEYGLGSWEAIKMD
PSLQLHDKILPDGIDLKPQGKHLATRADYLLKVLKKNSSQENGGDTVSTGLGKPRKKRKG
KPKTTAEIIEKDFSDSEEDSRANFNNNSAREETSRDSFFDQHKKKKKTLKPDKIPEEEDT
LTRDSVDIKKKKKKAAKKSKQNDAMHFTAGAVPVPVALESEFTGELPAEVFSKCKEMMRP
VKRALKRLDNPDEGMSDKEQLVHTRQCLLKIGDRINECMGHYNDPEVIKQWRSFLWIFVS
KFTEFDAKKLHKLYKHAYRRREEEQEHEGGNNKPQSSEKHGNHVEKHGEGKKHKRPPESG
DGGEKAAKKAQLEHRPKDHKSSASVSNGPRHSASTNSLTHKHSVLDSSHDSNSNDRWTHA
SPLARAEDQPRTRYENSSSAYGRSQHYPERNYHGNDPRFGDSHHRFNNDRREYSSSHAYH
RDRGDHSSSSYHSHHDHHGNYRSDHRGDRRPDYGQYGHRDYGSNRPDSSSYQSHTDRKRK
GDPITDRRSQKDPRLHEDTSR
NT seq
5466 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagccttctattgaagatcctgctgactttgacagtcccctctttggaccattg
agtaatgacaaaagtccaaaagcaggttcctctaacaaagagaataaagattccataaaa
aaggagatagagaacaatgccagtgggtctgggtcggactctggaaactcaagtagtggt
tcaagctcagatgagagcgactcagaatctgggtcaaggtcgggttctaactcggaaact
tcatcatcagaatcggatgattcggagtccaatgagaggagtgagaggaagacggcttcc
cacttagatgatgactcccaggatactcagagtaccaatctgtcctcaaagagaggccgg
ccacgcaaatctagtatcaatgacatcaaacagattttgcgggaaatgtcagatgatcct
gaccttttgggacttagacgatcaggaagggcgaaaaaagaacctgttagatataatgct
ttgggtgacagtgacacagatgataagccaagaagaaaaggaggaagaaagggttcagat
gactggaatgcttctgatagtggcagtggtgagagtagtgacgattacaaaccttcctca
agggccttgtccaggccgggaggtagaagaaacttgcgggccgcaccaccgaggcgaggc
agacaggccaccagtaatctgagcgattcagatgagtccaacagtgaggaggatactcgc
agttcttcaaggatttattccaacaaaaaaatcagacgtgactataccacaagaaggaaa
ggaactaagagtaaagtcagttacaaggaagactcggacgaccagacggactcggatgat
attattgaggtcacacaggatcagatggaggccgaggaggaggacgataataaggagatc
atagagaaggtgctggacgaccggatcggacgtgtcacagcaacaggaagcaaaacgacc
atatataatgtacaagacaatggagaccctaacgatggagtggacccagccaccgaggag
acggagaagcagttcctgatcaagtggaagaactgggcacacatccacaacacctgggag
tcatataaaacactgaaggaacagaaagtccacggtctgaagaagctggacaactacatc
aaaaagcaggacgagatcagagagtggaaagatcaagcaacgcctgaagatattgattat
tttgaatgtcagcaggaaatggtacaggagttgtaccagcaacatatgcatgtggaaaga
attattgctcactcaaaccaaaaaatggccaatgagaacaatggttacccagattacctt
tgtaagtgggaaggtcttccatactcggaatgtacatgggaggaaggcgagcttgtgtca
cgcaaatttcaagtgttagtggatgagtacaatgtacgaaacaagtcgcagaggaccccc
actccagccaaatattgcaaagcccttcgataccgtccaaagttcgcaccattgaaaaat
cagccttcattcctgggtggagaaaataatcagcttgtgttgagggattatcagttagat
ggtgttaattggctcatgcatacatggtctaaagaaaacagtgtgatattagcagatgaa
atgggccttgggaagaccattcaaaccataggatttttatcaattttatacaatacattc
caagtgtatggacctaatgtgttagttgtacctctctccaccattgctgcttggcagaga
gaatttaaactctgggctccagaaatgaatgttgtgatatacttaggggatataagtagt
cgaaataagatacgggaacatgaatggtgccacagtggaaacaagaggttaaagttcaat
gtgttggttacaacctatgaaatcctcctgaaagacaagtctttcctgggtagtgtgaac
tgggccaccctgattgtggacgaggcccatcggctgaagaacgatgattctctcctctac
aagactctttttgaatttaattccaaccatagacttctgattacgggtacccctctacag
aactccctcaaagaactgtgggctcttctccacttcatcatgccagacaagttttacaag
tgggctgattttgaggagaaacattcatctgctcagaagacagggtttgttaatttgcac
aaagagctggaatccttcctgttacgtcgtgtaaagaaagatgtggagaaatctctacca
gccaagacggagcaaattctacgagtagagatgtcatctatacaaaaacagtattacagg
tggatattaacaaagaactataaagcattaagtaaaggactgaagggtaatgtgtccagt
tttgtgaacataataatggaactgaagaagtgttgtaaccattctcagctgatcaggccc
ccagaggaagagttctctgacagacttgcttctttggtcaaaggaagtggcaaattaatt
ttgctggataaactattattaaggctcaaggaatctggtcaccgtgtcctgattttctcc
cagatggttagaatgctggacatcctggcagaatatctacaaatgaggcattttcaatac
caaagattagacgggtcggtgaggggagacctccggaagcaggccatggaccacttcaat
gccgagggatcagaggacttctgtttccttttgtcaactcgggctgggggtctcggggtt
aacttagccactgccgacacagtcattatttttgacagtgactggaatcctcaaaatgac
ctgcaggctcaggctcgagctcacagaatagggcagaaaaatcaggtgagtgtgtacaga
ctggtcaccaagaacagcgtggaggaggacatagtggagcgagccaaaaggaaaatggtg
ctggatcatctggtcatccagagaatggacaccacgggccggaccgtgctcaaccggggc
attccttccagtaattctaccccattcaacaaagatgaattgacttccattcttaaattt
ggtgctgaagaattatttaaagaaaatgatgaagatgaggatgaaccacaggtggatata
gatgaaattctaaagcgagctgaaaccagagaagtggaggaaaataatacaggtgtaggg
gacgagctgctgtctcagtttaaagtggtcagctttgacaacatggaggatgaggaaata
gaacaaacaccagggacgaggactgaggaggaagacaagtcctgggattccatcatccct
gaagcagatagacgaaaaatagaggaagaggaggaacagaaacgcttgttagaacttaac
ctccctccacgatccaggaaatcactgcaacagcctcaggttggtgatgactcggatgac
aatagcaggagaaaaggtaaaaggaatgtggatgatgaagacagcgaagaagacgatgat
gatgatgaagatgatgatgaccagccaaggaaacgtggtagaccaaaaatgtccaagaca
tcagttcggggcttcaatgactctgaaatccgacgctttatcaaaagctttaaaaaattt
ggaagaccaatgacaaggttggatgcaatcgcctgtgatgctgagcttcaagagaaatca
gagagtgatctccagaggctggcagaaatactgataagaaactgtgaacaagccatagag
gaggccaagaacaagacagagcaggacaataatgaaggaggtaagaaaggtaacaggggt
ccctcttgcaagatttccagtgtctctgtcaacgcccaggcaattgtgaaggcggggcag
gagttagagcccctggcagcaactatccctgctgatgctgatgagaggaagagataccag
ctaccattcaaagccaaggctgtacactgggactgcatctgggatgtagaggaggactcc
aaccttctgaagggcatctatgagtacggactgggcagctgggaggccattaaaatggac
cccagccttcagcttcatgataagattctgcctgatggaattgatctgaaaccacaagga
aaacacttggctacacgagctgattatctcctgaaggtgctaaagaagaactcaagtcag
gagaatggaggggacacggtgtccacaggattgggcaagcctaggaagaagaggaagggt
aaacccaagacgacggccgagataatagagaaggacttcagtgattccgaggaagattcc
cgtgctaattttaacaataatagtgctagagaagagaccagtcgtgatagcttttttgat
caacataagaaaaagaaaaagactttaaagcctgacaagattccagaggaggaagataca
cttacaagggattctgtggatataaaaaagaaaaagaaaaaggcagccaaaaagtccaag
cagaatgatgcaatgcatttcactgctggagcggtacctgttccggtagctctggaatcc
gagttcaccggggagctaccagctgaagttttctcaaagtgcaaggagatgatgcggcca
gtaaaaagagcactaaaacgcttggacaaccccgatgagggaatgtcagacaaagagcag
ctggtacacactcgtcagtgtcttctgaagatcggggaccggatcaatgagtgtatgggt
cactacaacgaccctgaggtcatcaagcagtggcgcagttttctgtggatttttgtgtcc
aagttcactgagtttgatgctaagaagctccacaagttgtataagcatgcctacaggagg
agagaggaggagcaggaacacgagggtggtaacaacaaaccacagtcatcggaaaaacat
gggaaccatgtggaaaagcatggggagggtaagaaacacaaacggcccccagagtccggg
gatggaggcgagaaagcggccaagaaagcccagcttgagcaccggcccaaggatcacaaa
agttctgcctctgtaagtaacggtccccgtcatagtgccagcaccaacagcttaactcac
aaacacagtgtccttgattctagtcacgactccaactctaacgataggtggactcatgct
agtcccttagcacgggccgaagatcaacctagaactaggtatgagaacagttccagtgca
tatgggcgttcgcagcattatccagagaggaattaccatggcaatgaccccaggtttggg
gactcacaccataggttcaacaatgatcggcgagagtattcttccagtcatgcatatcat
cgcgatcgaggtgatcattcatcatcaagttaccattctcatcacgatcaccacggtaac
taccgatcagatcaccgtggtgaccggcgtcctgactatggacagtacggtcaccgcgac
tatggcagcaaccgtcccgatagtagtagttaccagtctcatacagacaggaagcgtaaa
ggggacccaatcacggaccggagatctcagaaagaccctcgactccatgaggacaccagc
cggtag
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integrated database retrieval system
