Magallana gigas (Pacific oyster): 105327664
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Entry
105327664 CDS
T03920
Name
(RefSeq) ribonuclease 3 isoform X1
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
105327664
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crg03019
]
105327664
03009 Ribosome biogenesis [BR:
crg03009
]
105327664
03036 Chromosome and associated proteins [BR:
crg03036
]
105327664
Enzymes [BR:
crg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
105327664
Messenger RNA biogenesis [BR:
crg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
105327664
Ribosome biogenesis [BR:
crg03009
]
Eukaryotic type
90S particles
RNase
105327664
Prokaryotic type
rRNA processing factors
105327664
Chromosome and associated proteins [BR:
crg03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
105327664
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helical_CED_Drosha
Ribonucleas_3_3
Ribonuclease_3
RM44_endonuclase
dsrm
Motif
Other DBs
NCBI-GeneID:
105327664
NCBI-ProteinID:
XP_011426557
LinkDB
All DBs
Position
2:complement(56397602..56409732)
Genome browser
AA seq
1369 aa
AA seq
DB search
MNFFGNQEMRNDGRGSGNNMSPHPNQGMLPQNNMLLQGRSPNNLQQMMGLQMPVAPNMQL
FNAAGSAMWNPRAQGLQGLRQGMANQAMANLQMMQQGANQMMSAAGVNMTGANQMLQGPG
SIMAGANQLLQRGMSPIIPGLNLQLPPPGSGLGILDAPGMRAPGLMSGVAQNMMGLQAGL
FQQGMSSMGQNQAGLPSPVVSQGNRKEDRSRRDRDRSGREDRRDRRNPGRSDRGDRSGDD
SRTRERRSDSKSSGDRRDGRSYDRKSERGGRDRGRMDRDRSTDSRDRSTDSRDSRQYRPD
RRRPSPPRPSSRNAKESRRSSPRRSRSPIRRDRARQSDSRSSYDVLNGQDEIELPEEIIP
AWLRCSPADLYFRRNNETGCFNATKRMQDLVEKFETDLVQRSARVRESKPPVEIPKYPVM
ESHHHHHHSGSESSSSSSSEEDSEEEGEEDSKEEEWLDALNKRKKHPYRLHDDLWYNDQG
ELNDGPLCKCSLKSQKSGIRHSKYPGEKAIPRCDPHSNNSDKLFHYKITMSPPTNFLTKA
PTIIEHDNHEYIFEGFSLLSHEKLENIPTCRVIRFNIDYTIHFIEEPIPDNFTVKSLDLF
QQFLFDEILELVDLDWKGPGTNEHCNRFHLMPRFARLLPENGKEILSMNDVLTYLLKSSK
PLLEETELAQILKYDVHEWQGFVDEVRGSVVTFPGKKPSSIRIDQLDRNQDENHLIQFPL
IIHFGIRPAQLSYAGDPNYQRTWKQYVKFKHLLNSKPKVTFTDKQKLEAKEKYLQDLRMK
SSMKREVTVEISSEGFLRTGIRSDITQHAMLMPVLLGHLRFHLCIRQLQKEINYQFKDPQ
LLQLALTHTSYKVNYGTNPDHARNSLSNCGVRQLEYGDRKIHYVHTRKKGINILINIMSR
LGKQDECSSEIPHNERLEYLGDAVVEFITSVHLFYMFPYLEEGGLTTYRAALVQNQQLAV
LAKKLHLENYMLYAHGPDLCHESDLKHAMANCFEALLGALYMDGGIDLADKVFAETLFKD
EDKYLNIWRDLPLHVLQEDEPGSDRHWVESSPTLQKLVKFEESIGVKFDHIRLLARAFTL
RSVGYNHLTLGHNQRLEFLGDTVLQLVASDYLFKHFPDHHEGHLSLLRSSLVNNRTQSIV
CDDLGISDYVIFSDSKGEKQDKKTKEKADLLEAFIGALYVDKDVEVCNKFCEVCFFPRLK
DFILNQDWNDPKSQLQQCCLTLRELDGGEPDIPVYKCIESIGPTNTRRYTVAVYFRHERL
ATGIGHSIQQAEMAAATNALMERSELFPILAHQKRFLERKHKKKRSSRKGGRDEDSGKDQ
WGGSERKESKEQEDRGKSEGATPSTNEALPQKVTSLIDSFKERKKKTNT
NT seq
4110 nt
NT seq
+upstream
nt +downstream
nt
atgaatttctttggaaaccaagaaatgaggaatgatggaagggggtcagggaacaacatg
tctccacatccaaaccaaggaatgctaccacagaacaacatgttactgcagggaaggtct
cccaacaacttgcagcagatgatgggtctccagatgcctgtagcacccaacatgcaactg
ttcaatgcagcagggtctgcaatgtggaatcctagagcacaaggtctgcagggactgcga
caaggaatggccaaccaagctatggcaaaccttcagatgatgcagcaaggagccaatcaa
atgatgtcagctgctggagtcaatatgacaggggccaatcaaatgctacaaggtccaggc
agtataatggcaggagccaatcagttgcttcaaagagggatgtcaccaataattcctgga
ttaaatttacagctaccacccccagggtcaggactaggtatactagatgcaccaggcatg
cgagcccctggtctcatgtcaggtgtagcccaaaacatgatgggtctccaggcagggctg
tttcagcaggggatgtcttctatgggtcagaaccaggcaggcctcccctctcctgtggtc
agccagggcaacaggaaggaggatcgcagtaggagggacagagatcgctcaggtcgagag
gacagaagagacagaaggaatcctgggagatcggaccgtggagacaggtcaggagatgac
agcaggacaagagaaagaagaagtgactctaagagttctggggacagaagagatgggagg
tcatatgacaggaagtctgagcgtggaggtcgtgacagaggtcggatggaccgggacaga
agcacagactccagagacaggagcacagactccagagatagccggcaataccgaccagac
agacgcaggccaagtcccccaagaccatcatctagaaatgccaaagaaagcaggagatcc
agtccacggagatctagaagtcccatccggagagaccgggcacggcagtcggacagccgc
tcgtcgtatgacgtgctgaacggtcaggacgagatagaactgcccgaggagatcattccc
gcctggctcaggtgctcccctgctgacctttacttcaggagaaacaatgagactggctgc
ttcaatgctacaaagagaatgcaggacttggtggagaagtttgagacggaccttgttcag
aggtcggcacgggtcagagagtccaaacctcctgtggaaatccccaagtacccagtgatg
gaaagccaccaccatcaccaccactcaggttctgagagcagtagttccagcagctctgaa
gaggattctgaggaggaaggggaggaggatagcaaagaggaggagtggctggacgccctc
aacaaacgcaagaagcacccctatcgtctccatgacgacctgtggtacaatgaccaaggg
gagctgaatgatgggccattatgtaagtgtagtctgaagtctcaaaaatcaggaattaga
cacagcaagtatcctggcgaaaaggcaattccccgctgtgacccccacagtaacaacagt
gataaactctttcactacaaaatcaccatgtccccgcccactaacttcctgacaaaggcc
cccaccatcattgagcatgacaaccatgagtacatctttgagggattttctttgctgtct
catgagaagctggagaatatacctacttgcagggtgatacgatttaacatagactacaca
attcatttcatcgaagaacccattccagataatttcacagtgaagagtctggacctgttt
cagcagtttttatttgatgaaattttggagctggttgacctggactggaaaggtccgggg
acaaatgaacactgtaaccgattccatctcatgccgcggtttgcaaggcttttgccagag
aatggtaaggagatcctgtctatgaacgacgtgctgacgtacctactgaagagctccaag
cctctgctggaggagacggaactcgcccagatcctgaagtacgatgtccacgagtggcag
ggctttgtggatgaagtgcgggggagtgtggtcactttccctggaaagaaaccttccagt
attagaattgaccagttagacagaaaccaggatgaaaatcacttaatacaattcccactc
attattcacttcggaatcagacctgctcagctcagctatgctggggatcccaattatcag
agaacctggaaacaatatgtcaagttcaagcacctgctgaacagtaaacccaaggtcacc
ttcacagacaaacagaaactagaggcaaaggagaagtacctacaggatcttagaatgaaa
agttctatgaaaagagaagtcactgtggagatcagtagtgaaggattcctgagaacaggg
attagatctgacatcactcagcatgctatgctgatgcctgttctactgggacacctgaga
tttcatctctgtataagacagctgcagaaagaaatcaactaccaattcaaagacccacaa
ctcttgcagctggccttgactcatacttcatataaagtcaattatggaactaatcccgat
catgctagaaattccctgtcaaactgcggggttcgtcagcttgagtacggagatcgaaaa
atccactatgtccatacaagaaagaaagggatcaacattctaatcaacatcatgtcccgc
ctcgggaagcaggatgagtgttcatcagagattcctcacaatgagagactggagtatctc
ggggacgctgtggtcgagttcatcacaagtgttcatctattctacatgtttccttacctg
gaggagggtggactcaccacttaccgagcggcactcgtacagaatcagcagctggccgta
ctcgcaaagaagctacacctggagaactacatgctttatgcccacggccctgacctctgt
cacgaatctgacctgaagcatgccatggccaactgttttgaggcactgctaggagccctg
tatatggatggagggattgacctggcagacaaggtgtttgcggagactctgtttaaggat
gaggataaataccttaacatctggagggacctgcccctccacgtcttacaggaggatgag
ccggggtcggaccgccactgggtcgagtccagccccaccctacagaaattagtgaaattt
gaagagtccattggagtaaagtttgaccatattcggttgctagcccgggcctttaccctg
cgcagtgtgggatacaatcacctaacactgggacataaccagagacttgagtttctggga
gatacagtgctacagttagtggcctcagattatctgtttaagcatttccctgaccatcac
gaaggacatctttcattattgaggagttctctagtcaataaccggactcagtccattgtc
tgtgatgacctgggcatctctgattatgtcatcttctctgactctaaaggagaaaaacaa
gacaagaagacaaaagaaaaggctgatttactagaggcctttatcggtgccctgtatgtc
gacaaagatgtagaggtgtgcaacaagttctgtgaagtctgcttcttcccaaggttaaag
gacttcatcctgaatcaagactggaatgaccccaagtcccagctacagcagtgctgcctg
accctgagggaactggatggaggggagccagacatcccagtctacaagtgtatagagtct
attggtccgaccaatactcggcggtacacagtggctgtatacttcagacacgagaggctg
gccactggaataggtcacagcattcaacaagctgaaatggccgctgccactaatgctctg
atggaaagatcagaactgtttccaattcttgcccatcagaaacgatttctggaaagaaaa
cacaagaaaaagcgatccagcaggaaaggtgggcgtgatgaggattctggcaaggatcag
tggggaggcagtgagcgtaaagagagcaaggagcaggaggatcggggaaagtccgaggga
gccacgccctccactaacgaggccctaccccagaaagtgacctcccttattgactccttc
aaggagagaaagaaaaaaacaaatacctga
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integrated database retrieval system
