Magallana gigas (Pacific oyster): 105327943
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Entry
105327943 CDS
T03920
Name
(RefSeq) uncharacterized protein isoform X1
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
crg
Magallana gigas (Pacific oyster)
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crg03019
]
105327943
Messenger RNA biogenesis [BR:
crg03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
105327943
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
UBA_6
Regnase_1_C
KH_N4BP1_1st
zf-CCCH_2
zf-CCCH
zf-CCCH_4
KH_DEAH11_2nd
UBA_N4BP1_C
Motif
Other DBs
NCBI-GeneID:
105327943
NCBI-ProteinID:
XP_011426927
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All DBs
Position
9:complement(24973898..24991987)
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AA seq
1242 aa
AA seq
DB search
MTIDDFYVDKSKEPLIELYKARVYKVFHVNIALCYDEDKLCTKICMSSADENGTSQNIKK
AKSYLESVTADGDSVSRIVLTLSQSDFAMVQQFQSRVERDSQAVVDLSKDNSQVCIFGKK
ENVSIAQALIDRMVKKDNSISPCIDIRLRGGHDESGFHEGSEFSYKNGSSSSGGVDFMKE
NGSSTCGDVTEKTDISSVKHRTVESANKVSDVSVSGGKRPQRAHAALKRTMSVGMGPLPS
SLSEPRKNPLTKTVSYGNELRLAENSLSRLKLSHQSSTSSDDEETTDEEEYNTKIEFALK
LGYSESQLASVLKKLGNKAGQNEILSELIKLSTTSVDRDSKSSDEGNSSFCAMEGSSENL
LNFTPENCFDLSDSSSNFRHIVIDGSNVAMSHGNKEIFSCRGIQLAVDWFRERGHQAITV
FVPQWRKETSRIDAKITDQEILFQLEKEKILVFTPARRIGGKRVVCYDDRYILNLASDSG
GVVVSNDNYRDLVSEKPEYRKVVEERLLMYSFVNDRFMPPDDPLGRHGPSLDNFLSKEPR
QPEPLPPICPYGSRKCTYGNKCKFYHPERGNMPHKMVNEKLAEQAKQKIQEARENRKTQD
GSKSKQPLCKKPSRGKMAVSRTQSLTPKTHPDSLGAEAPVKRHSGDFGEVTVNIDSRDLE
NDEKWKSYNEKLSEHRKQMEQADIEHQRQRSDAKESQFSMVTMQSMEPFNMASKMEQQCG
SRSSSPMQRSTPSPQLMLQNEEFLSGHLMLAKKLSDEAGETKSHKSEERLFNRSPPIGYH
GNSPLATPVKQNKPPSQQQHQPLLMNQQLPPPPPPSHQPISQQFSHPVPMQHQHQKLSRQ
YSLQGPQDPRLQRGQMAPAAHSTRTPFPQENYGAFGLARNPFSSSENFSTPPPPFSGRPE
HRYLGEESEHAALARMQSAPETLFTRNDNNSHKRFGRMVRQNSSSDTQLHLLGDLDLGPN
EYSLFPAEVLDFNRRCQQNQQFSSGMNAQRMGDPTRQLKTRAVGYTKQEYRSQHDNGETK
WTFEPVLEHGAAYKSQFSGIQGIDAFESDYPPTPSWQNQDQLKFPVQESYHCPQQPYDIF
HEYGGLPFSQPHRTVEHCQSGGFSFQTPTSNLHAAPSNFCESQQHSMLQNPPSSSSCGKQ
NIGVIGQEHKQSLSRTSSANLGGHPAPNQQSSAMNAMASPMMEGNGSRPKFTDFSPIQPT
DSRYNLYYHLCGLFPEPKVRKVMNEHPEETSPQVLCALIIGM
NT seq
3729 nt
NT seq
+upstream
nt +downstream
nt
atgactatagatgatttttatgtcgataagtcaaaagagccgttgattgaattgtataaa
gcgcgagtgtacaaggtttttcatgtaaacatcgccctgtgttatgacgaggataaactg
tgtacgaaaatatgcatgtcatcagcggatgagaatggcacatcgcaaaacattaaaaag
gcgaaaagctaccttgaatccgtaacggcagatggagactcagtgagtcgaattgtcctg
accctttctcaatctgatttcgccatggttcagcaattccagtcgagggttgagagggac
tctcaagcagtagtggatctatcgaaggacaattcacaagtgtgcatctttgggaagaag
gagaatgtcagcatcgcccaagccctgatagacagaatggtgaagaaagacaacagcata
tcgccctgtatcgacatacgattacggggaggacatgatgagagtgggtttcatgaaggg
tcagaattttcatacaagaacggttcaagtagtagtggaggtgtagactttatgaaggaa
aatgggagttcaacctgtggtgatgtaacagaaaagacggatatatcatcggtgaaacac
cgtacagtggaaagtgctaataaagtttcagatgtctctgtgtcggggggaaagagaccc
caacgggcgcacgctgccctgaaaaggaccatgtcggtggggatgggtccccttccgtca
tccctatcagagcccagaaaaaatcccctgaccaagacggtgtcatacggcaatgaactg
agactggccgaaaactcgctgtccagattaaaactctctcatcagtcctcgacttcttcg
gacgacgaagaaacaacggacgaagaagagtacaacacgaagattgagtttgcgctcaag
ttgggatattccgagtcacagctggcatctgtgctgaagaaactcggcaacaaagcggga
cagaacgagattctgtcggaactgatcaagctgagcacaacgagtgtggacagggactca
aagagcagcgatgaggggaactcgagtttctgtgcaatggagggttcttcagagaacctt
ttgaacttcacccctgagaactgtttcgacctttcggattcttcctcaaattttcgtcat
attgttatcgatggtagcaatgttgcaatgagtcatggcaacaaggagatcttctcgtgt
cgagggatacagctggctgtcgattggttcagagaacgaggtcaccaagccatcaccgtc
ttcgtgcctcagtggcggaaagaaacctcacgcattgatgccaaaatcacagatcaggag
atactgtttcaactggaaaaagagaagattttggtgtttacacccgcacgcagaatcgga
ggaaagagagtggtgtgctatgatgatcggtacatcttgaatctagcgtcggacagcggg
ggcgtcgtggtctctaacgataactaccgggatctggtcagcgaaaaaccagagtaccgc
aaagtggtggaagagaggcttctgatgtactcctttgtcaatgacaggttcatgcctccg
gacgacccgctgggccggcatggtccgagtctggacaacttcctgtccaaggaaccccgt
cagccagagcccctgcctccgatctgtccgtacggcagcaggaagtgcacctacggaaac
aagtgcaagttctatcacccggagcggggcaacatgccccacaagatggtcaacgagaag
ctggcggaacaggccaaacagaaaatccaggaggcgcgggaaaatcgcaaaacccaggat
ggaagtaaatctaagcaacctttgtgcaagaaaccttcccgaggtaagatggccgtgtca
aggacacagtcacttacccccaaaactcaccccgacagcctgggagcagaagccccggtc
aaacgccacagtggggactttggcgaggtgacggtaaacatcgacagccgggacctggag
aatgacgagaagtggaagagttacaacgagaaactgtccgagcaccggaaacagatggag
caggcggatatagaacaccagagacagagatctgacgccaaggaatctcagttcagcatg
gtcacaatgcagagtatggagccgttcaacatggccagtaaaatggagcagcaatgtggg
tcaaggtcgtcctctcccatgcagaggtcaacaccgtccccgcagctgatgctgcagaac
gaggaatttctcagcgggcacttgatgctggccaagaaactttcggacgaggccggggag
actaaatcccacaagtcagaggagagactatttaaccgaagccctcccataggttaccat
ggtaacagcccgttggccacgcctgtcaagcagaacaagcccccctcacaacaacaacac
caaccgctactaatgaatcagcagctccctccccctcctcctccatcacaccagcccatc
tctcaacagttttcccatccagtgcccatgcagcaccagcatcagaaactcagcaggcag
tattctctgcaaggacctcaggaccctcgccttcagcgtggccaaatggctccagcagca
cattccaccaggacaccttttccgcaagaaaactacggagcatttgggctggcaaggaat
cccttttcatcatcagaaaacttttccacccctcctcctccctttagcggcaggcccgag
catcgttacttgggagaagaaagcgagcatgcagctctggccagaatgcaaagtgcgcca
gagacgcttttcacaaggaatgacaataactcgcacaagaggttcgggagaatggtccgt
caaaacagttcgtcggacacgcaactccatcttcttggagatctggatcttggaccgaac
gaatacagcttatttcctgcggaggtcctggatttcaacagaagatgtcagcaaaatcaa
cagttctcctctggtatgaatgcacagcgaatgggagatcctactcgtcagttgaaaacc
agggcagtgggttatacaaaacaagaatatcggtcgcagcacgacaatggagaaaccaaa
tggacttttgagccagtcttggagcatggtgccgcctataagagccagttttctggaatc
cagggcatcgatgcgtttgaatcggactatccacccaccccgtcatggcaaaaccaggac
cagttaaaattcccagtgcaagaatcttatcactgtccacaacaaccttatgatatattt
cacgagtatggaggactacctttctcccaaccacacagaactgtagagcattgtcaatca
gggggcttcagttttcagacaccaacttccaatttacatgcggccccctccaacttttgt
gaaagtcaacaacattccatgttacagaaccccccctcctcctcctcttgtggcaaacaa
aacattggggtcataggtcaagaacacaaacagagcctgtcccgaacgtcgtctgcaaat
ctaggcggccatccagcccccaatcagcaaagttcggccatgaacgcaatggcttcgccg
atgatggaaggcaacggaagtcgaccaaagttcacggatttctcccccatccagccgacc
gacagtagatacaatctttactaccatttgtgcggactctttcccgagcccaaagtgaga
aaagtgatgaacgagcaccctgaggagacaagtccccaggtgttgtgtgcactcatcatt
ggcatgtga
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