Magallana gigas (Pacific oyster): 105328438
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Entry
105328438 CDS
T03920
Name
(RefSeq) squamous cell carcinoma antigen recognized by T-cells 3 isoform X1
KO
K22611
squamous cell carcinoma antigen recognized by T-cells 3
Organism
crg
Magallana gigas (Pacific oyster)
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
crg03041
]
105328438
03036 Chromosome and associated proteins [BR:
crg03036
]
105328438
Spliceosome [BR:
crg03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
105328438
Chromosome and associated proteins [BR:
crg03036
]
Eukaryotic type
Histone modification proteins
Other histone modification proteins
105328438
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
HAT_PRP39_N
Suf
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
RRM_occluded
Lsm_interact
HAT_Syf1_CNRKL1_C
LSM_int_assoc
UTP6_C
DUF5452
Motif
Other DBs
NCBI-GeneID:
105328438
NCBI-ProteinID:
XP_034337392
LinkDB
All DBs
Position
3:complement(39054304..39075298)
Genome browser
AA seq
960 aa
AA seq
DB search
MAESMEKAEADKTIEEECDEKEDTEDAEMQSDSSESEVDNDEEDEEANKKRLEELQKQIE
ENTYFYDGHTEMIKILRNTGELEKLREAREKMSQYFPLTQELWLEWLRDEIPLATDEKER
KHVYDLFERAVKDYLSVDVWLEYVQFCIGGMGQIDGISHIRDVFERALATAGLHVAAGSS
LWEAYREFENALMSGYMPQPGQVATPEQEEKFNSQQDRVVSLFKRQLSIPLMDMQETMSE
FKEYYEDEIDDGTKEAYNKALEKLEKLMPYEEALTAAEPPRLDAYLSYIDYEMTHDDPAR
IQNIFERALQENCLNSELWLKYAKYLDHKRLQVETLVLGMYERSVRNCPWCSQLWQRYVL
AMERFHKPQKEIKELVDRALQCGFNPGADYLVVWSTYCDYLRRRIKWNQDHEEELDLFRI
TIESAVNFLAYYGVEADPKGSLQQFWAVIEGKFCGNMTRAREIWTEIMSAGRNHEAALWL
DYLRLERAYGDNKHCRKLLNRALNVVTDWPEAIVEAMINFEREEGDLEQYDAAVTKCEVH
MDAVNKERQEAEQEEKRQNRRIEKKQKRFDAKQKGKKGPGQKNDTEKSPKKVSEGKAGKN
ENRKRKVSQEEPNDFKVPEVPNSKGPPPPGFKEPPPPTGQKGPPPPGFKGPPPPGYKGAE
PATKKPKIDETPNNGAGGDSPTTHSDFVEKAEQDPDKSRRTSFVSNLDYSIDEDRIGQIF
AKCGEMTDIRLVKTIKGKSKGYAYVEFKDELGVLEALKLDRTPIEGRPMFVSKCEDRSQK
KAQFKFSTAMEKNKLFIKNLPFTCSKDALIQIFSEHGPVKEVRMVTYRSGAPKGLAYVEF
EDEQDAAKAVMKTDGLKIGDHEIEVAISNPPQRGTPINVREETSFTPTLGGGKKETETRG
KARTQLSLVPRSIQRTPAPSKGANPKSNPLPSLEANGQAAASATATKMSNDDFRKMLLKK
NT seq
2883 nt
NT seq
+upstream
nt +downstream
nt
atggcggaaagcatggaaaaagcagaagccgataaaacaattgaggaggagtgcgatgaa
aaagaggatactgaggatgcagaaatgcagtctgattccagcgaatcagaagttgataat
gatgaggaggacgaggaagcaaacaaaaagagacttgaagaacttcagaaacagatagaa
gaaaatacctacttttacgatggccatacagagatgatcaaaatactgcgtaatacaggg
gagctagaaaagctgagggaggcccgagagaaaatgagccagtactttccattgacgcaa
gaattatggttggaatggctcagagatgaaattcctttggcaactgatgagaaagaaaga
aaacatgtttatgacttgtttgaaagagctgtaaaagattatctatctgtagatgtttgg
ttggagtacgtacagttttgtattggaggaatgggacagattgatgggatatcccacatt
cgtgatgtttttgagcgggctttggcaactgctggactccatgtggcagcgggttccagt
ttatgggaggcatacagagaatttgaaaatgctctgatgagtggatatatgcctcagcca
ggacaagtagcaactccagagcaggaggagaaattcaactctcagcaggatagagtagtc
tcccttttcaaaaggcagctgtctattcctctaatggatatgcaagagaccatgagtgaa
tttaaagaatactatgaggatgaaatagacgatggaaccaaagaggcctacaataaagct
cttgagaaacttgaaaaattgatgccatatgaggaagctttaacagcagctgaacctccc
aggttggatgcctatttgtcctacattgattatgagatgacccatgatgatccagccaga
attcaaaacatctttgagagagccctgcaagaaaactgtttaaattcagaattgtggttg
aaatatgcaaagtatctggatcacaagagactacaggttgagactttagtcttagggatg
tacgagagatctgtcaggaattgtccgtggtgttcccagttgtggcagagatatgttctg
gctatggagagatttcacaaacctcagaaagaaatcaaagagttggtggacagagcccta
cagtgtggttttaacccgggggctgattacctggttgtgtggagtacttactgtgattat
ctacgtcgaagaatcaaatggaaccaagaccatgaggaagaactcgatttattcaggata
accattgagagcgctgtcaacttcctagcatattatggtgtagaagctgaccccaaagga
agcttacaacagttctgggcagtgatagagggcaagttttgtggaaatatgactagggca
agagaaatctggactgaaatcatgtcagcaggcaggaatcatgaagcagctctatggcta
gattatctcagattggaaagggcatatggtgacaacaaacactgtcgtaagctgctgaat
cgagctctcaatgtagtgacagattggccagaagctattgtggaggcaatgatcaacttt
gaaagggaggagggagatctggagcagtatgatgcagcagttactaaatgtgaagtgcac
atggatgcagtcaacaaggaaagacaggaagctgaacaagaggaaaaaagacaaaataga
aggatagaaaagaaacaaaaaaggtttgatgccaagcagaaagggaaaaagggtccagga
cagaaaaatgacacagagaaatccccaaagaaagtctctgaaggaaaagcagggaaaaat
gagaacaggaaaagaaaggtgtcacaggaagagccgaatgattttaaagtacctgaggta
ccaaattctaaaggaccaccccctcctggatttaaggaaccacctcctcctacagggcag
aagggacctccacccccaggttttaaaggaccaccacccccagggtataaaggagcagaa
cctgcaaccaaaaagcccaaaatagatgaaacccccaacaatggagctggaggggacagt
ccaaccacgcactcagattttgtggaaaaagcagaacaggatccagacaaatccagacgc
acgtcctttgtcagcaatctggattactccatagatgaagacaggattggtcagatattt
gctaagtgtggtgagatgacagatattcgattagtgaaaacaatcaagggaaagtcaaag
ggatatgcttatgtggaatttaaagatgagttgggtgtgctggaagctctgaaactggac
aggacgccgatcgaaggccgcccaatgtttgtgtccaagtgtgaagacagaagccagaaa
aaggctcagttcaagttttccactgcaatggaaaagaacaagttgtttattaagaacctt
ccattcacgtgctcaaaggatgctctcatccaaatctttagcgagcatggaccagtgaag
gaggttagaatggtcacctacagaagtggagctcccaaagggttagcttatgttgagttt
gaagatgagcaagatgcagcaaaagctgtgatgaagacagatggactaaagattggtgac
catgagattgaggttgcaatcagtaaccccccacagaggggtacccccataaatgtccgg
gaggaaacgtcatttactccaacactaggaggagggaaaaaggaaacagaaacgagagga
aaggcgcgtactcagctgtctctggtaccaaggtcaatacagcgaactccagccccctcc
aagggagctaaccccaagagtaaccccttgccatccttggaagcaaacggacaagcggca
gctagtgctacagccaccaagatgagcaatgacgatttcagaaaaatgttactgaagaaa
taa
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