KEGG   Magallana gigas (Pacific oyster): 105328593
Entry
105328593         CDS       T03920                                 
Name
(RefSeq) nucleoporin SEH1 isoform X1
  KO
K14299  nucleoporin SEH1
Organism
crg  Magallana gigas (Pacific oyster)
Pathway
crg03013  Nucleocytoplasmic transport
crg04150  mTOR signaling pathway
Brite
KEGG Orthology (KO) [BR:crg00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    105328593
 09130 Environmental Information Processing
  09132 Signal transduction
   04150 mTOR signaling pathway
    105328593
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:crg03019]
    105328593
   04131 Membrane trafficking [BR:crg04131]
    105328593
Messenger RNA biogenesis [BR:crg03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     105328593
Membrane trafficking [BR:crg04131]
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    105328593
SSDB
Motif
Pfam: WD40 Beta-prop_THOC3 Beta-prop_WDR5 Beta-prop_IFT122_1st Beta-prop_WDR3_1st WD40_Prp19 Beta-prop_EML_2 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 Beta-prop_WDR3_2nd ANAPC4_WD40 WDR55 Beta-prop_RIG_2nd WD40_MABP1-WDR62_2nd EIF3I Beta-prop_WDR35_TULP_N Beta-prop_IFT140_1st WDR90_beta-prop_4th Ge1_WD40 Beta-prop_TEP1_2nd Beta-prop_EIPR1 Beta-prop_WDR19_1st Beta-prop_TEP1_C Beta-prop_WDR36-Utp21_2nd
Other DBs
NCBI-GeneID: 105328593
NCBI-ProteinID: XP_034337757
LinkDB
Position
3:9950009..9958267
AA seq 376 aa
MFVTKQIESEHKDLIHDVSFDFYGKRMASCSSDQSVKVWDLGEDGEWKCTATWKTHSGSV
FRVTWAHPEFGQVLATCSFDRQAAVWEESFGDVGREGVKSNWIKKSILVDSRTAVTDVKF
APKHLGLQLAICCSDGMVRIYECPDVMNISQWSLQHDIQTKFKCSCLSWNSSRMHPPMIA
VGSDDNNPSGGGKCQVFEYNDSTRKWTKVETIVAVTDPVHDVAFAPNLGRSYHLLAIASK
ELKIISLTPLGRDSAIGNQSVVSRFEMKQVASFADHESPVWRVSWNVTGTVLSSSGDDGC
VRLWKANYLGRWKGISILKGDASQTRQDRNFSANPSQNPAGAVSQQSNEELVRMNIKRNS
GWPSFNTKKDQGKTYY
NT seq 1131 nt   +upstreamnt  +downstreamnt
atgtttgtaacaaaacagatagaatctgaacacaaggacttaatacacgatgtatctttt
gacttttatggtaaacggatggcatcatgctctagtgatcaaagtgtcaaggtatgggac
ttaggagaagatggagagtggaaatgcacagcaacctggaagacacacagtggatcagtg
ttcagagttacgtgggcccacccagagttcggacaggtcctggccacctgttcgtttgac
agacaagcagctgtttgggaggagagttttggggacgtaggaagggagggggtgaagagt
aattggatcaaaaagagtattttagtggacagtcgaacagctgtaactgatgtcaaattt
gcaccaaaacatctaggtctacagttggcaatttgctgttccgatggaatggttcgaatt
tatgaatgtcccgacgttatgaacatcagtcaatggtctctacaacatgacatacagaca
aagttcaagtgcagctgtctcagttggaactcctcaaggatgcaccccccgatgattgca
gtagggagtgacgataacaatccgtcagggggaggaaaatgtcaagtgtttgagtacaat
gatagcacaaggaaatggacaaaagtagagacaatagtagcagtcacagacccagtacac
gatgtggcgtttgcaccaaacctcggcagatcctatcatttattggctatagcttccaag
gaactaaaaatcatcagtttgactccattgggaagagactccgccatcgggaaccagtct
gtggtcagcaggtttgagatgaagcaggtcgccagttttgcagatcatgaatctccagta
tggagagtgagttggaatgtgacagggacggtcttatcctcatcaggagacgatggctgt
gtcaggttatggaaagcaaactatcttggaagatggaaaggtatatccatattaaagggt
gatgcttcccagactcgccaggacagaaatttcagtgccaacccctctcagaaccccgca
ggggccgtcagtcaacagagtaatgaagagttggtaaggatgaatattaaaagaaactct
ggatggccgtcatttaataccaagaaggaccaagggaaaacgtactactga

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