KEGG   Crassostrea gigas (Pacific oyster): 105328627
Entry
105328627         CDS       T03920                                 
Name
(RefSeq) negative elongation factor D
  KO
K15181  negative elongation factor C/D
Organism
crg  Crassostrea gigas (Pacific oyster)
Pathway
crg03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:crg00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    105328627
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:crg03021]
    105328627
Transcription machinery [BR:crg03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    NELF complex
     105328627
SSDB
Motif
Pfam: TH1 CATSPERB_2nd
Other DBs
NCBI-GeneID: 105328627
NCBI-ProteinID: XP_034337810
LinkDB
Position
LG6:23984982..23992770
AA seq 575 aa
MDDFEDDEENMWEGRHDVGDSPDEDDEDEEEKMAAQQECVDLFSSKDYIMEPGVFGTLKR
FLQAGGSPEKVVEMLSDNYTAVAQTVNLLAEWLIQAGVDIKIVQEMVENHLKSMIMKHFD
PKKADSIFTDEGETPSWLAEMIEFPTWRELFYKLAEEYPDCLMLNFTVKLISDAGYQGEI
TSVSTACHQIEVFSRVLRTSITGMLEGGEEIITKNLPEFTKMVCHGEHTYLYSQVLMHIL
AQETKGGSNIRRLCQELQKSAQAREMDVTPITLALSGAAAYPRACQALSSMLSKNALNPA
DITILYKMYMEMNPPPVDLIRVPAFLELLIDALFKPSSRVNPDHKPKYIFVLSYAASVTE
VFKKGQRKSINKDELKPTTQALERVQSLCAENKSSSELISDINTLFLNIKFPVIAYGVLR
WVDYTVSDASYFKLNTDHTPLHLVLIDEIVTNHVLLHQQALDLFIRVFESSFEDLEVLFR
LELKKSVLDRMVHLFSRGFVIPVVTYIKNCLDKQDTDISLIRHFVTEVLDIIAPPYTPEF
GQLFLPLIECKDITDSIRSDDGSDPVSEFILHCKA
NT seq 1728 nt   +upstreamnt  +downstreamnt
atggacgactttgaagatgatgaagaaaatatgtgggaaggcaggcacgatgtgggcgat
tcaccagatgaggatgacgaagatgaagaagaaaaaatggctgcccaacaggaatgtgtg
gacctgttctcctctaaggattacatcatggagccaggagtgttcggcacactgaaaaga
tttctgcaagccggtggatctccagagaaagttgtggagatgttgtcagataactacaca
gcagtagcccagactgtaaatctcctggcagagtggctcatccaagcaggtgtggacatt
aagattgtacaggagatggtagagaatcacttaaagtccatgattatgaagcactttgac
cccaaaaaggctgactccattttcactgatgagggagagacaccatcctggctagctgaa
atgattgagtttcccacctggagagagctgttctataagctggctgaggagtatcctgac
tgtctaatgcttaactttactgtcaagttgatatctgatgctggttaccaaggggagata
acctctgtctccacagcttgtcaccaaatcgaggtattctcacgagttctgagaacctcc
atcacaggaatgttagagggaggagaggaaatcattactaaaaatctcccagaatttaca
aaaatggtgtgtcacggggagcacacttacctgtacagccaggtcctgatgcacatactg
gctcaggagacgaaggggggatccaatatcaggagactgtgccaggaactacagaaaagt
gctcaagccagggagatggatgtgacccccattacccttgcccttagtggggcggcagcc
tacccccgcgcctgtcaggcactctcctccatgctgtccaagaatgccctcaatccagca
gacatcactattctgtacaagatgtacatggagatgaacccacctcctgtggatcttatc
agagttccagcatttttagagctgttgatcgatgccctgttcaagccttcctcccgagtg
aatcctgaccacaaacccaagtatatttttgtcctgtcctacgcagccagtgtcactgag
gtgttcaaaaagggtcaaaggaagagtataaacaaggatgagcttaagcccacgactcag
gccttggagcgagtgcagtcattatgtgccgagaacaaaagttcatcggagctcatctca
gacatcaacactctcttcctcaacatcaaatttcctgtgattgcctatggagtgttgaga
tgggtggattacactgtgtctgatgcgagctatttcaaactgaacactgaccacactcca
ttacacttggttctcattgatgaaattgttacaaaccatgttctgcttcaccagcaagct
ttagatcttttcatcagggtgtttgaatcatcctttgaggacttagaggtcctcttcagg
ctggagcttaaaaagtcagtccttgatcggatggtgcatctgtttagcagaggttttgtt
atccctgttgtgacttacatcaaaaactgtctggacaaacaggacacagatatttcactc
atcagacattttgttactgaggttctcgacatcatcgctcctccttacactccagagttt
ggacagctgtttcttcccttgatcgagtgtaaagacatcacagattcaatacgatcggat
gatggaagtgaccctgtctcagagttcatactgcattgcaaggcatga

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