KEGG   Magallana gigas (Pacific oyster): 105329337
Entry
105329337         CDS       T03920                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB9
  KO
K03017  DNA-directed RNA polymerase II subunit RPB9
Organism
crg  Magallana gigas (Pacific oyster)
Pathway
crg03020  RNA polymerase
crg03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:crg00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    105329337
  09124 Replication and repair
   03420 Nucleotide excision repair
    105329337
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:crg03021]
    105329337
   03400 DNA repair and recombination proteins [BR:crg03400]
    105329337
Transcription machinery [BR:crg03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     105329337
DNA repair and recombination proteins [BR:crg03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      105329337
SSDB
Motif
Pfam: Zn_ribbon_RPB9 Zn_ribbon_TFIIS Zn_ribbon_recom DUF3716 Ogr_Delta DZR Zn_ribbon_NrdR CpXC
Other DBs
NCBI-GeneID: 105329337
NCBI-ProteinID: XP_011428835
UniProt: K1QHM9
LinkDB
Position
6:complement(2028750..2033193)
AA seq 127 aa
MDLYETHDDGPGFVGIKFCKECNNMLYPKEDKENKLLLYACRNCDYQEEATNPCIYVNKI
THEVDELTQIIGDVIADPTLPRTEDHPCPKCAHKESVFFQSHSTKAEEGMRLYYVCTNPQ
CVHRWTE
NT seq 384 nt   +upstreamnt  +downstreamnt
atggatttatacgaaacacacgacgatggtccaggttttgtgggaatcaagttttgtaaa
gaatgtaacaatatgttgtatccaaaagaagacaaagaaaacaaactgttgttatatgct
tgccgaaactgtgattaccaagaggaggcaaccaatccctgcatctatgtcaacaagatc
acccatgaagtcgatgagctgacacagattattggggacgtgatagccgacccaaccctg
ccccgaacagaggaccacccttgtcccaagtgtgcccacaaagaatccgtcttctttcag
tctcacagcaccaaggcagaggaaggcatgcgactctactatgtttgcaccaacccccag
tgtgtgcatcgctggaccgagtag

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