Magallana gigas (Pacific oyster): 105329363
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Entry
105329363 CDS
T03920
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105329363
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crg03019
]
105329363
03400 DNA repair and recombination proteins [BR:
crg03400
]
105329363
Enzymes [BR:
crg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
105329363
Messenger RNA biogenesis [BR:
crg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
105329363
DNA repair and recombination proteins [BR:
crg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
105329363
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
Cas3-like_C_2
ResIII
Motif
Other DBs
NCBI-GeneID:
105329363
NCBI-ProteinID:
XP_034316593
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All DBs
Position
5:complement(44568578..44570625)
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AA seq
523 aa
AA seq
DB search
MAAISVKISEIQNFFQIQLTENQIRGIKGLAAGQDVFVGTRTGSGKSLIYESCPIIFGES
SVCVVISPLLSIMKEQVNRLSGLGLKATYIGKKDCCIDDVTRGYYQFVFGNPEVLVGNDK
WRGIFRHPEFSQRHKLTVIDEAHTVYQWGEKKDSDDAFREHFSKIGELRSLSLNIPLLSL
TATASPSNRKRILKSLCFRDNHIVIIDSPDRPNIKINVKCVKNNSDISNIFSWVIDELNS
RKKMHKIVIFCESIKDCAVLYTMFRRKCDASLVQMFHSKTAEHIKEKIRIDMESEDGQIR
VLISTNAAGMGVNFKGLHNVVHYGPPRDLDTLVQQMGRAGRDGEFSVELILYKNHKGHLK
KIDSDVLSLIKSEDQCRRNILCKAYNAHSHIFEHLHECCDFCEKTCKCLDCPRLSHPVFN
AIEPQEEDAFQRDVTDENKITLKHKLELLQSNLPKLFGNNSELSVETIKCITDNCHRIFT
TSDVMEYGTIWLLDTAEQVIKIFDDVFDDIIIYGSSDSENDFT
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atggcggctatcagtgtaaaaatatcggagatacagaacttttttcagatccaactgaca
gaaaatcaaattcgtgggataaagggcttagcggctggccaggacgttttcgtaggcaca
cggacgggaagtggaaaatctttaatttacgaaagttgtccaattatctttggcgagtcg
agtgtgtgtgtggtaatatccccacttctcagcatcatgaaagagcaggtgaatagacta
tctggtctaggtttgaaagcaacatatattgggaaaaaagattgctgtatagacgacgtt
acgaggggatattatcagtttgtctttggaaatcctgaagtgctggttggaaacgacaaa
tggagaggaatatttcgacatcccgaattttctcaacgacacaagttgacagttattgat
gaggcacacacagtttatcaatggggcgagaaaaaggattctgatgatgccttcagggaa
catttctcaaagatcggcgagttgaggtccctcagtttgaacattccactactctctctt
acagcaaccgcaagtccgtcaaataggaaacgaatcctgaaaagtttatgtttccgtgat
aatcacattgtaataattgacagtcctgacagaccaaacatcaagattaatgttaaatgt
gtaaaaaataattctgacattagtaacatattttcatgggttattgacgaactcaactca
aggaaaaaaatgcacaaaattgtgatattctgtgaaagcattaaagactgcgccgttctc
tacaccatgttcagacggaaatgtgatgcttctttagtacaaatgttccacagcaaaacc
gcagagcacatcaaggaaaaaattcgcattgatatggagtcagaagatggtcaaattagg
gtccttattagtacaaatgctgcaggaatgggagtgaactttaaaggcctgcataatgtt
gttcactatggacctccacgtgaccttgacacactagtacagcaaatgggcagggcagga
agagatggtgaattctctgttgaattaattttatacaaaaatcataagggacatttaaaa
aaaatagacagcgacgttctttcattgataaaatcagaggatcagtgccgaagaaacatt
ttgtgtaaagcatacaacgctcattcacacatttttgaacacttgcatgaatgttgtgat
ttttgtgaaaagacctgcaaatgcttagactgtcctaggctatctcatcctgtatttaat
gcaattgagccacaggaagaggacgcatttcaacgtgatgtgactgatgagaataagata
actctcaaacataaactagaacttttacaaagtaatctacctaagttatttggcaacaat
tcggaactaagtgtagaaactattaagtgtattactgacaattgtcacagaatatttaca
acaagcgatgtgatggaatatggaacaatctggctgctcgacactgctgaacaagtgatt
aagatttttgatgatgtatttgatgatattataatatatggttcatcagactctgaaaac
gacttcacttga
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