KEGG   Magallana gigas (Pacific oyster): 105329472
Entry
105329472         CDS       T03920                                 
Name
(RefSeq) intraflagellar transport protein 140 homolog
  KO
K19672  intraflagellar transport protein 140
Organism
crg  Magallana gigas (Pacific oyster)
Brite
KEGG Orthology (KO) [BR:crg00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   03037 Cilium and associated proteins [BR:crg03037]
    105329472
Cilium and associated proteins [BR:crg03037]
 Primary cilia and associated proteins
  Intraflagellar transport (IFT) complex A
   105329472
SSDB
Motif
Pfam: TPR_IF140-IFT172 Beta-prop_IFT140_1st Beta-prop_IFT140_2nd TPR_IF140_C Beta-prop_IFT122_1st WD40_CDC20-Fz Beta-prop_WDR3_1st WD40_WDHD1_1st WD40_Prp19 Beta-prop_EML_2 Beta-prop_WDR5 Beta-prop_THOC3 DSE1_N ANAPC4_WD40 Beta-prop_HPS5 Beta-prop_WDR19_1st Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_VPS8 Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd WDR55 TPR_2 Beta-prop_WDR36-Utp21_1st TPR_IFT80_172 Beta-prop_WDR35_TULP_N Beta-prop_TEP1_2nd PPR_2 TPR_1 TPR_12 TPR_COPA_B EIF3I TPR_GEMI5 Beta-prop_Aladin Beta-prop_WDR36-Utp21_2nd WDR90_beta-prop_4th TPR_INTS8_3 Ig_BT4661_6th HEAT_Nup120
Other DBs
NCBI-GeneID: 105329472
NCBI-ProteinID: XP_011429047
LinkDB
Position
7:14173928..14191648
AA seq 1482 aa
MAVYFDHRLDTDRSGINIDTQWYDGSPILAVNTYSDDTGGSVNLFLDEGEKLLNIPLTRT
CQATAMAWHPTKKILAVGWDNGELLVWNEHDHELHESLPLHKTSITVLGWSSAGTRLSSG
DKAGVLMVWKADAKGRLQQNPLHQHHIQEPLKIMLYRPVPPPDPNNDIAQLARAAVSGDE
SALDMFNWKKGKNNARGGAPFGAQEALTFFVGGATGGVYYVNDAGQCAQIFNVDGPVLTL
LHYDEKNILITVTESMLLTQHFITPEGEAREVLKVKMSGRGDSKTIVWAGLGILATSLGE
GVVRMWDLEHEDNYILSLEGHNSYDHNESITCISYCPEKGTLAGGTNMGNVALWKYSPPL
TGKVVDGEMKWKLQAPATVEGPIKQIRWGSNKHLLAVNTIANVFMLNEQVMSAGFKEQTA
VVQYGPSSLSVEVFSNMAHHDLKTDIQVKGIFTTKDALAVWNGRRVITYEYSADKSSIKA
AGTFTTETMNVCLHEQNVYCIEAMKVQVRTHQGTVKQTINFSEPEGQPVSIDVCGNYLVI
GTNIGLVRVYDLSRREAKPHSQPRNLGEIIPGFGSIISCKCNCSGTRVSVLVKSTNDAID
PKLYFWDTEIDQVSYFNFETGRGEQDDFPPEQVEGVEGDTNDAERGKTQAAKDIAGRSPM
THYWDAHDPKLIVCEAKILMDIFHKKEKEEKKIVSLSKTMDDGPVEVMIVSLFSTPENGI
LIQDSFPLPEQYQTLLGIEVPYHYFVNKSENTSDDDGQGDGPRPEAVSPRMVARRTMRDF
VGLEDSDKNTKDAMLNFSYYLTIGNMDEAFKAIKLIKSESVWENMAKMCVKSRRLDVASV
CLGNMGHARGARALREAMKEPELDAKVAVLAMQLGLKEDAERLLKNCKRYDLLNEFYQSI
GDWKKALETAEMYDRIHLRTTYFNFAKHLEMKGEYSEAIPNYEKSDTHRFEVPRMLFDEP
EALEHYISMHKDKALHKWWAQYMESTGDMENALQYYENAQDYLSLVRVYCYCGQMDKAAE
ICNNTGDRAACYHLGRQYENQDQIKEAIHFFTRAQAYFNAIRLCKEHGMEDQLMNLALMG
RPEDMIEAARYYEQKPGAQDKAVMLYHKAGNFSKALDLSFRARQFGALQLISGELDERAD
PELLKRCGDFFMENGQYDKAVDLLAIGKKYWEALKICMDQTVEINEDLAEKLTPSKDDAG
IDTMERVKILEAIAEVCMHQGEYHLATKKFTQAGNKIKAMKALLKSGDTEKICFFANVSR
QKEIYIMAANYLQSLDWRKDPEIMKNIIGFYTKGRALDSLAGFYDACAQVEIDEYQDYEK
ALRALGEAYKCLTKAKMNDEMLLEERLAQLKNKMALIKKFVTARRAFEENPEEGIKQCQI
LLEESDLESGVRVGDVYGVMIEYYARRDRWKAAHAAIEEMKSRIPNMSIGYYVNMRTVEA
VYRALDIPMGDMNRGKMNGVMDEEDGEIVEEEVDNIYGHDEV
NT seq 4449 nt   +upstreamnt  +downstreamnt
atggctgtgtactttgatcatcgattggatactgaccgcagtggaataaacattgacaca
cagtggtatgatggcagtccaattctcgcagtgaatacatacagtgatgacactggggga
tccgtaaatctctttcttgatgagggagaaaagctgctaaatatcccactgacccgcaca
tgtcaggccaccgccatggcgtggcaccctacaaagaagatccttgcggtgggctgggac
aatggggaactgttggtgtggaacgaacatgaccacgagctgcacgagtcactccctcta
cacaagaccagcattacagtccttggatggagttcagcggggaccagactttcatctgga
gacaaggctggggttttaatggtatggaaagctgatgccaaaggccggctccaacagaat
cctttacatcagcaccacatacaggagccactcaagatcatgttgtatagaccggtccct
cctccagatcctaataatgacatagcacaacttgcccgggctgctgttagtggggatgag
agtgctttagatatgttcaactggaagaaaggaaagaacaatgcaagaggaggggcacct
tttggggcccaggaggctctgaccttctttgttggtggagcgacaggtggtgtgtactat
gtaaatgatgcaggccagtgtgcccagatcttcaatgtagatggacctgttttgaccttg
ctgcactacgatgaaaagaacattctgatcacggtcacagaaagcatgttgctgactcag
catttcattactcctgagggagaagccagggaggttctgaaggttaaaatgagtggaaga
ggagattcaaaaaccatcgtttgggcagggctgggaatcttggccacatctcttggagaa
ggtgttgtgaggatgtgggacttggaacatgaagataattacatactgagcctagaaggc
cacaacagttacgatcataatgagagcatcacctgtatctcatactgtcccgaaaaagga
actttggctggaggaaccaacatgggaaatgttgctttatggaagtattctccacctctt
actgggaaagttgtggatggagagatgaagtggaaactacaggccccagccacagtggag
ggtcccatcaaacagataaggtggggatccaacaagcacctgctggcagtaaatacaatt
gccaatgtgttcatgcttaatgagcaagtgatgagtgctggcttcaaggagcagactgca
gttgttcagtatggacctagctccttatctgtggaggtgttctccaacatggcccatcac
gatctgaagactgatattcaagtgaagggcatattcacaaccaaagatgctttagcagtg
tggaatggtcggagagtgattacatatgaatattctgctgacaagtctagcatcaaagcg
gctggaacatttaccacagaaaccatgaatgtttgtctgcatgaacagaatgtctactgc
atagaggcaatgaaagtgcaagttagaactcatcagggtacagtcaaacagactataaac
ttttcggagcccgagggacagccggtcagtatagatgtgtgtggaaactacctggtcatt
ggaaccaatataggattggtcagagtgtacgacctttcaagaagagaggccaagccccac
agtcagcctagaaatctaggggaaataattcctggattcggatccattatttcctgcaaa
tgtaactgtagtggaactagagtcagtgtcttggtcaagtcgacaaatgatgctattgac
cccaagctatatttctgggacacggaaatagaccaggtgtcgtactttaactttgagact
gggcggggagagcaggatgacttccccccggagcaagtggagggggtggagggggacacc
aatgacgcagagagaggaaaaactcaggctgctaaagacattgctggacggtctccaatg
acccactactgggatgctcacgaccccaaactcattgtctgtgaagctaaaattttaatg
gatatatttcataagaaggagaaagaggagaagaagattgtatccttgtccaagaccatg
gatgatggaccagtggaggtgatgatcgtatctttgttcagcaccccagagaatgggatt
ctgattcaggacagctttcccctccccgagcagtaccagacactgctaggcatagaggtc
ccctatcactactttgtcaacaagtccgagaacacgagtgatgatgatggacagggagat
ggtccccgcccagaggccgtgtcccccaggatggtggccaggaggacaatgagggatttt
gtggggctggaagacagcgacaaaaacaccaaggacgccatgcttaacttcagctactac
ctgaccataggcaacatggacgaagctttcaaggcgatcaagctcatcaaaagtgagtct
gtatgggagaacatggccaagatgtgtgtcaagagtcgccgtctggacgtggccagtgtg
tgtctgggtaacatgggccatgcccggggtgcccgggcactgagggaagccatgaaagag
ccagaacttgacgccaaagtggcagttctagccatgcagcttggactcaaggaggatgct
gagagattgctgaagaactgtaagcgttatgatttgttgaacgaattctaccagtctatt
ggagattggaagaaagccctggaaacagccgaaatgtacgaccgtattcatttgaggact
acttactttaacttcgccaagcacctagaaatgaagggtgaatactctgaggctattcca
aactatgagaaatcagacactcaccgatttgaggtccctagaatgctgtttgatgagcca
gaggcattagagcactacatcagcatgcataaagacaaagcattacacaaatggtgggct
cagtacatggagagtacaggcgatatggagaacgctctccagtactacgaaaacgcccag
gattatctctccttagtccgcgtctactgctactgtggtcagatggacaaggcagccgag
atatgtaacaacactggtgaccgtgcagcctgttatcacttggggcgacagtatgagaac
caggaccagattaaggaggcgattcacttctttaccagggcccaggcttacttcaatgcc
atcagactctgtaaagagcatggtatggaggatcagctgatgaacctggctctaatggga
cgtcccgaggacatgatagaggcagcgcgctattacgaacagaagcccggggcccaggac
aaagctgtcatgttgtaccacaaggcgggaaatttctccaaagctttggatctctcattc
cgagcccgccagtttggagctctgcagcttatatctggtgagcttgacgagagagcggac
ccagaactactgaagcggtgcggtgatttcttcatggagaacggacagtacgacaaggca
gtagatctactcgccatcggtaaaaagtattgggaggctttaaagatctgcatggaccag
acagtagagattaacgaagacttggcagagaaactgactccaagcaaggatgatgcagga
atcgacacgatggagcgggtcaaaatcttggaggccattgcagaggtttgcatgcatcag
ggagagtaccacttggctacaaagaagtttacacaggccggaaataaaatcaaggcaatg
aaagctctattgaagtccggagacacagagaagatctgtttctttgctaacgtctccaga
cagaaggagatttacatcatggctgccaactacctccagtcactagactggcgaaaagac
cctgagattatgaagaacatcatagggttctacaccaaagggagagcactggactccctg
gccggattctatgatgcttgtgcacaggtggagatagatgaatatcaagactatgagaaa
gctttacgtgcattaggagaggcctacaagtgtctcactaaggccaagatgaatgacgaa
atgttactggaagaaagattagctcagctgaaaaataagatggcactgataaagaaattt
gtcactgctagaagggcgtttgaagagaatcctgaggagggaatcaagcagtgtcagatt
ctgttagaggagtctgatctagagtcaggggtgcgtgtaggggatgtgtacggggtcatg
atcgagtattacgcccgcagggacagatggaaagctgctcatgcagcaatagaagagatg
aagagtaggatccccaatatgagcataggttattatgttaatatgagaactgtagaagca
gtgtatcgtgctttggacattcccatgggggatatgaatagaggaaagatgaatggagtg
atggatgaggaagatggagaaattgtagaagaggaagtggataatatttatggacatgat
gaagtctga

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