Crassostrea gigas (Pacific oyster): 105330684
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Entry
105330684 CDS
T03920
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
crg
Crassostrea gigas (Pacific oyster)
Pathway
crg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105330684
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
crg03041
]
105330684
03009 Ribosome biogenesis [BR:
crg03009
]
105330684
Enzymes [BR:
crg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105330684
Spliceosome [BR:
crg03041
]
Complex A
U2 snRNP components
U2 related factors
105330684
Complex B
105330684
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
105330684
Ribosome biogenesis [BR:
crg03009
]
Eukaryotic type
90S particles
Helicases
105330684
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
nSTAND3
SRP54
ABC_tran
Flavi_DEAD
T2SSE
AAA_30
TsaE
PhoH
AAA_25
Motif
Other DBs
NCBI-GeneID:
105330684
NCBI-ProteinID:
XP_034330316
LinkDB
All DBs
Position
LG4:complement(12050798..12060662)
Genome browser
AA seq
727 aa
AA seq
DB search
MSKRRIDVGDSLSQSKRGREDEKEKKDEKSYKSVFEQFGISKPTLQMNPFTGLPYTPKYF
ELLNKRKMLPVWEYKEKFCEILNNHQILVLVGETGSGKTTQIPQWCLEWVRCRYQKKGVA
CTQPRRVAAMSVSQRVSEEMDVGLGQEVGYSIRFEDCTSSKTLLKYMTDGMLLREAMSDP
LLEAYGVVMLDEAHERTLATDILMGLLKEVAKQRGDLKIIVMSATLDAGKFQNYFDNAPL
MTVPGRTHPVEIFYTPEAERDYLEAAIRTVVQIHMCEEGPGDILLFLTGQEEIDEACKRL
QREIDNLGPEVGDMKCIPLYSTLPPNLQQRIFEPAPATKANGAVGRKVVVSTNIAETSLT
IDGVVFVIDPGFAKQKVYNPRIRVESLLVTAISKASAQQRAGRAGRTKPGKCFRLYTEKA
YKQEMQDNTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAAL
DDDGELTELGSMMAEFPLDPQLAKMVIASCDHNCSNEILSITAMLSVPQCFVRPTEMKKT
ADEAKMRFAHIDGDHLTLLNVYHAFKQCQEDPQWCYDNFVNYRSLKSADNVRQQLARIMD
RFNLRRSSTDFASRDYYLNIRKALVSGFFMQIAHLERTGHYLTVKDSQVVQLHPSTCLDH
KPEWVLYNEFVLTTKNYIRTVTDIKPEWLIKVAPQYYEMSNFPMCEAKRQLERIIAKLES
KQYQEGF
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaaagacgtatagacgtcggtgattccctttcacaaagtaaacgtggacgggaa
gatgaaaaagaaaagaaagatgagaagtcgtacaagtcggtgtttgagcagtttgggatc
tccaagccgacgttacagatgaatcccttcacaggcttgccgtacactccaaagtacttt
gagttactgaacaaaaggaagatgcttcctgtctgggagtacaaggagaagttctgtgag
atcctgaacaatcaccaaatcctcgtgctggttggtgaaacaggcagtggaaaaacaaca
cagattcctcagtggtgtttggagtgggtacgatgtcgatatcagaaaaagggagtggct
tgtacccagcccaggagggtggccgctatgtctgtctctcagcgtgtgtcagaggaaatg
gacgtgggtcttggacaggaagtagggtacagcattcgattcgaggactgcacatcgtcc
aagactctactcaagtacatgacagacggtatgttacttcgggaggcaatgtcagaccct
ctattggaggcctatggggtggtcatgctggacgaggcccacgagaggacactggccacc
gacattcttatggggctccttaaggaggtagccaagcagcggggcgatctcaaaatcatc
gtcatgagtgccaccctagacgccggaaagttccagaattactttgataatgcccctctg
atgacagtgccaggcagaacacatcctgtggagatcttctacactccggaggccgagcga
gactatctggaggctgccatccggaccgtggtccagatccacatgtgtgaggagggacct
ggagacatcctgctcttcctcaccggacaagaggaaattgatgaggcatgtaaaagacta
caaagagaaattgataacctgggaccagaagtgggggacatgaagtgtatccccctgtac
tctaccctgccccccaatctacaacagaggatctttgagccggcgccggcaaccaaggct
aacggggcggtgggaaggaaagtggtggtgtccaccaacatcgcagaaacatcactgacc
attgatggagtcgtgttcgtgattgacccagggttcgccaaacaaaaagtatataaccca
aggattcgggtggagtctctcttagtcactgctatcagtaaggccagtgctcagcagaga
gcggggcgtgctggacgaacaaagcccggaaaatgcttccgtctatacacagagaaagct
tacaaacaggaaatgcaagataacacataccccgaaattcttcgatccaatctgggatct
gtagtgctacaactgaagaagctaggaattgatgatttagtgcattttgatttcatggac
cccccagctcctgaaaccctgatgagagctcttgagttgcttaattacctggctgcgctc
gacgatgatggtgagctcactgagttgggctcaatgatggcggagtttcccctcgaccct
cagctggccaaaatggtcattgccagttgtgatcacaactgttccaatgagattttgtcc
atcaccgccatgttgtcagtcccacagtgttttgtccgacccacggaaatgaagaaaacg
gcagacgaggccaagatgagatttgcccacatagacggcgatcatctgaccctgttgaat
gtctaccatgcctttaagcaatgccaggaagaccctcagtggtgctacgacaactttgtc
aactaccggtcgctgaagagcgcggacaatgtgcgacaacagctggcccggatcatggac
aggttcaacctccgccgctccagcactgacttcgccagtcgggactactacctcaacatc
aggaaagccctggtctccgggttcttcatgcagattgcccacctggagaggacgggtcac
tatctgacggtcaaggacagccaggtggtacagctccacccgtccacctgcctggaccac
aagcctgagtgggtcctatacaacgagtttgtactgaccactaagaactacattaggact
gtgaccgacatcaaaccagagtggttaatcaaggtagctcctcaatattatgaaatgtcc
aacttcccaatgtgtgaagccaagcgacagctggagcgaattattgcaaagttggagagt
aagcagtatcaggaaggattttaa
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integrated database retrieval system