Magallana gigas (Pacific oyster): 105331061
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Entry
105331061 CDS
T03920
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg03013
Nucleocytoplasmic transport
crg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105331061
03015 mRNA surveillance pathway
105331061
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crg03019
]
105331061
Enzymes [BR:
crg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
105331061
5.6.2.5 RNA 5'-3' helicase
105331061
Messenger RNA biogenesis [BR:
crg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
105331061
mRNA cycle factors
Common to processing body (P body) and stress granule
105331061
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
DEAD
SLFN-g3_helicase
UvrD-helicase
Helicase_RecD
NPHP3_N
nSTAND3
AAA_16
ATPase
AAA_22
SRP54
PhoH
AAA_10
Motif
Other DBs
NCBI-GeneID:
105331061
NCBI-ProteinID:
XP_011431401
UniProt:
K1PBZ4
LinkDB
All DBs
Position
6:18375764..18384353
Genome browser
AA seq
1108 aa
AA seq
DB search
MSVDAYAPNSQSLTFLEPEEDLIGADTQGTDYDYTDFTLPSQTQSQTQASQLEHGQSQSQ
VNGPEAPIQNGLDKGVVGIAQGVGELTFEEEEEEQFMMKDLPKHACSYCGIHDPASVVYC
NSTKKWFCNGRGNTSGSHIINHLVRAKAKEVTLHKDGPLGETVLECYNCGCRNVFLLGFI
PAKADSVVVLLCRQPCATLTNLKDMNWDPSQWQPLIQDRQFLSWLVKVPSDQEQMRSRQI
SAQQINKLEELWKDNPDATLEDLEKPGVDEEPTQVLLRYDDAYQYQNIFGPLVKLEADYD
KKLKESQTQDNIVVRWDVGLNKKRIAFFHLPKANDEMKLMHGDELRLRYQGELHKPWSGV
GHVIKIPDNHSDEVAIELKSNAGVPSECTHNFVVDFVWKSTSFDRMQAALKTFAVDETSV
WGYIYHKLLGHEVEDVVIKCQLPKRFSVPNLPELNHSQVYAVKTVLQRPLSLIQGPPGTG
KTVTSATIVYHLVKQNNGQVLVCAPSNIAVDQLTEKIHKTGLKVVRLCAKSREAIDSPVS
FLALHNQIRNMESVPELQKLQQLKDETGELSSTDEKRYRSLKKQCEKELLQHADVICCTC
VGTGDPRLAKMQFRSVLIDESTQATEPECMIPVVLGCRQLILVGDHCQLGPVVMCKKAAR
AGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVAPGDRVRKGLDI
PWPQGDKPMFFYTTSGQEEISSSGTSYLNRTEAANVEKIATRFLRSNVKPEQIGIITPYE
GQRAYIVQYMQYSGSLNKKLYQEIEVASVDAFQGREKDFIILSCVRSNEHQGIGFLNDPR
RLNVALTRAKYGIIIVGNPKVLSKQPLWNHLLTYYKEQKCLVEGPLNNLKESMIQFSKPR
KLVNTSNPGGRFMSNIMFDAREVLIPGSVYDRSRGYNEPVVRTHDQLSYIGPERQYTGPA
LNIPVPVNMFMPPMPQPFNGQPMPMGNRNAPAQRGTGRRRGQKPPRYSNTQSQQNSSQYS
QGNSQSQASQDVSQPFSQGPLTQGPMSMSQPFQMSQPGLSGLSQPELSQDSFLADDFKSQ
ADGMLSQDSTYQGDRMFYASQLSQGPFN
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggacgcatatgccccaaattcccaatccttgactttcctcgaacctgaagag
gacctcattggggccgacactcaaggaaccgattatgactacacagatttcaccctacca
tcccagacccagtcacagacccaggcatcccaacttgaacacggacaaagccaaagccag
gtgaatggtccagaagcccctatccagaatgggctggacaaaggtgttgtgggcattgcc
cagggggttggggagcttacttttgaagaggaggaagaagagcagtttatgatgaaagat
ctaccaaagcatgcctgctcatattgtggaattcatgacccagcatctgtggtgtattgc
aatagcaccaagaaatggttctgcaatggaagaggaaacacttctggaagtcatatcatc
aaccatcttgtacgagccaaggcaaaggaagtgaccctgcacaaagatggccccctggga
gagactgttttggagtgctataactgtggctgtagaaatgtgttcttgcttggattcatc
ccagccaaggcggactcagtggttgtactcctatgtcgccagccctgtgcaactcttacc
aacctgaaggatatgaactgggacccaagtcagtggcagccattgatacaggaccgccag
tttctgtcatggctggtcaaagtgccctctgatcaggagcagatgaggagccgccagatc
tcggctcagcagatcaataaactagaggagctgtggaaagacaaccctgacgccacgttg
gaggatttagaaaaaccaggggtggatgaggagcccacacaggtgttgctcagatatgac
gatgcttaccagtaccagaacatttttggacctctggtaaagttggaggcagattatgac
aagaagttgaaggaatcccaaacccaggacaacatcgtagtgcgttgggatgttggactc
aataaaaaacggatagctttcttccacctcccgaaagcaaatgatgagatgaagttaatg
catggggatgagttgaggcttcgttatcaaggcgagctgcacaaaccatggtctggtgtt
ggacatgtaataaagattccagacaaccatagtgatgaagtggccattgaactgaaaagt
aatgcaggagtgcctagcgagtgcactcataactttgtggtggattttgtatggaagtca
acatcctttgacaggatgcaggcagcgttgaagaccttcgctgtggatgaaacatctgta
tggggatacatctaccacaaacttctgggacacgaggtggaggatgttgtcatcaagtgt
cagctccccaagagattcagtgtccctaacctccccgagctgaaccactcccaggtgtac
gctgtcaagacggtcctccagcggcccctcagtctcattcagggtcctcctggaactggt
aagactgtgacatctgccaccattgtgtaccacttggtcaaacagaacaatggacaggtg
ttggtctgtgctccctctaacattgctgtggaccaacttactgagaagattcacaaaaca
ggactgaaggttgtacgtctgtgtgcaaagagcagagaagccattgattcaccagtgtct
ttcttggctcttcacaatcagattagaaacatggaaagtgtgccagagttacagaaactg
cagcagctgaaggatgagacaggtgagctgtcgtccactgatgagaaacgatacaggtct
ctgaagaagcagtgtgagaaagaattgttgcagcatgctgacgttatctgttgtacctgt
gtgggaactggtgatcctaggttggccaagatgcagtttaggtctgtcctgattgatgag
agcacacaagccactgaaccagagtgtatgatccctgtggtgctgggctgtagacagttg
atcctggtaggagaccactgtcagcttggccccgtggtgatgtgtaagaaggcagcccga
gcgggtctgtcccagtcgctgtttgagcgcctggtagttctgggcatcagacccatacgt
ctacaggtccagtacagaatgcaccctgctctcagcgctttcccatccaatatcttctat
gaaggatctctacaaaatggagttgcaccaggagaccgcgtaaggaaaggacttgacatt
ccctggcctcaaggagacaaacccatgttcttctatacaacatctggacaagaggaaata
tcaagttctggaacttcttatttgaataggactgaagcagctaacgtggagaagattgcc
acaagatttttgcgatccaacgtcaagcctgagcagataggtatcatcactccttatgaa
ggacagagagcctacattgtacagtacatgcagtacagtggatctctgaacaagaaactg
tatcaggagatagaagttgctagtgttgatgcttttcaagggagagagaaagatttcatc
attctctcttgtgttcgttctaatgaacatcaaggaatcggttttctgaatgaccctaga
cgtctaaatgtggctttaactcgagcaaaatatggaataattattgttggaaatcccaag
gttttatcaaagcaacctctttggaaccaccttttaacttactacaaggagcagaagtgt
ctggtggagggccctctgaataatctgaaggagagcatgattcagttcagcaagccccgc
aaacttgtcaacacgtccaacccgggaggacgttttatgagcaacataatgtttgatgcc
agagaagttctgattccgggaagtgtgtatgacagaagtcgcggatacaacgagccagtg
gttcgcacccatgaccagctgagttacattggtccagagagacagtacacaggccctgcc
ctgaacatcccagtgcctgtcaatatgttcatgccccccatgccacagccattcaatgga
cagccaatgccaatgggtaacagaaatgcccctgcccaaaggggtacgggacgtcgtcgt
ggacagaagcctccgcgctacagcaacacccagtcacagcagaacagttcccagtacagt
cagggcaacagtcagagccaggccagtcaggatgtatcccagccattctcccagggacca
ctgacccaggggccaatgtctatgagccagcccttccagatgagtcagccaggcttgtct
ggtctctcccagccagagctctctcaggacagtttcttggcggatgacttcaaatctcaa
gcagatggcatgctgtcccaggactccacctaccagggagaccgcatgttttatgcatca
cagttgtcacagggtccatttaattag
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integrated database retrieval system
