Magallana gigas (Pacific oyster): 105331426
Help
Entry
105331426 CDS
T03920
Name
(RefSeq) probable global transcription activator SNF2L2 isoform X2
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
105331426
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
crg03021
]
105331426
03036 Chromosome and associated proteins [BR:
crg03036
]
105331426
Transcription machinery [BR:
crg03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
105331426
Chromosome and associated proteins [BR:
crg03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
105331426
Chromatin remodeling factors
BAF complex
105331426
PBAF complex
105331426
GBAF(ncBAF) complex
105331426
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
BRK
Bromodomain
HSA
QLQ
ResIII
DEAD
HDA2-3
Motif
Other DBs
NCBI-GeneID:
105331426
NCBI-ProteinID:
XP_034312553
UniProt:
A0A8W8JRN5
LinkDB
All DBs
Position
7:complement(30156529..30183693)
Genome browser
AA seq
1665 aa
AA seq
DB search
MASGDDGGMMRATPPGPAYPPQQQQQENVQKIHKAMNQMEEKGMQDDPRYAQLAAMADMA
RNPGMPSQHHSMGHQRMGDYQGNMMQGPPHSMSGGSQSMGGGSQNMGGSQPNMMQGMGGP
QHRMGGMQPMPHQGQNMSQGMPPQGQGMGPQGPNMGQGMPPQGQGMGQGMPPQGQNMGQG
MPPQGQNMGQGMPPQGQGMGQGMPSNNPAMNNPMMSGSNAGGNYNPMGGQGMHGNSSMAG
QSNMSGSQPMNTGMGSNSPHPMPQGGTMPHKMGGSMPPMGGPNRPDQQGQPNMPNQMGGP
GGSQGSGRQTAFNQQQLSQLRAQIMAYKLLSRNQPIPDNIRMAIEGKRGPQMQRPPDPSG
RQPPGQVPNSQAPHNQAFNSGFSGGQMTQAPPNTSAGQLPQRPPGQQQGGSQAGPHGAAH
PPSSQSVMQQKQSKIAPVAKPQGLNPIDLLNERENRIAARISSRIKELQDLPATMPEDMR
TKAMIELRALRLLNFQRQLRSEVVSCMRKDTTLETALNTKAYKRNKRHSLREARVTEKLE
KQQKIEQERKRRAKHQEYLNAVLQHAKEFKEFHRNVTNKVGKLNKAMMVHHANTEREQKK
EQERLEKERMRRLMEEDEEGYRKLIDQKKDKRLAYLLAQTDEYISNLMTLVAQHKEDLKK
KKQKRRKKKREDKAEDGDSNMSEMRVSVIETSTGKVLSGDDAPLTSQLETWLELNPGYEV
APRDDGEESGSGDEEEEEPEQEESSLLAKPEKMLPKLTSPDDIDEGLAKEVITQASQEVD
DEYHRSATKAEEKSYYSVAHTVHEHVTEQASIMVNGKLKEYQIKGLEWLVSLYNNHLNGI
LADEMGLGKTIQTIGLITYLMERKKVNGPFLIIVPLSTLSNWVLEFEKWAPSVVKIAYKG
SPTTRRLLVPQLKAAKFNVLLTTYEYIIKDKAALSKLRWRYMIIDEGHRMKNHHCKLTQV
LNTHYCAPHRLLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFAMTGEKVEL
NQEETLLIIRRLHKVLRPFLLRRLKKEVESQLPDKVEYVIKCEMSALQRCVYRHMQARGI
LLTDGSEKDKKGRGGSKAMMNTIMQLRKICNHPFIFQHLEEAIAEHQGGTGASISGPDLY
RSSGKFEFLDRVLPKLKTLNHRVLLFCQMTSLMSILEDYFLYRGYRYLRLDGTTKSEDRG
QLLELFNQKDSPYFLFLLSTRAGGLGLNLQAADTVIIYDSDWNPHQDLQAQDRAHRIGQK
NEVRVLRLMTVNSVEEKILAAARFKLNVDEKVIQAGMFDQKSRGYERQQLLQSILENENE
EVEEEDEVPDDETINQMLARSEDEFDLYQKMDIERRREEARNPNRKPRLIEEAELPTWIL
KDEKEVERLTYEEEEDKLFGRGSRQRKEVDYSDSLTEKQWIKAIEEGNLDEVETVKQKSK
KPKKRKPEKDEESKPKKKRGRPPVEKLPPNPRKLTSIMKKILDVVLNYKDRDDRVLSEAF
FQLPSKKDLPEYYEIIAKPVDFKKIKQRIRDHRYRSLDDLETDVMLLCENAQSYNIEGSL
IYEDSIVLKSVFTSARERLEKEGVTYSDDNSSSNEEDEGEDEDGKGEDEEEEEEDEDGAS
SSKKHKKDKSKKKKDKAESSKKRKSRGKAKPVISDEDDETDEDYE
NT seq
4998 nt
NT seq
+upstream
nt +downstream
nt
atggcctcaggggatgacggggggatgatgcgggccactcccccaggtccagcataccct
ccccagcaacagcagcaagaaaacgtacagaagatacacaaggctatgaatcagatggaa
gagaagggaatgcaagatgacccaaggtatgcacagttagcagccatggctgatatggcc
agaaacccagggatgccaagccagcaccatagtatgggccaccagagaatgggagactac
cagggcaacatgatgcaaggcccaccccatagcatgagtggtggatctcaaagcatggga
ggagggtcacaaaacatgggcggcagccaaccaaatatgatgcaaggaatgggtggtcct
caacatagaatgggaggaatgcaaccaatgccacaccagggacagaatatgagccaagga
atgccacctcaaggccaaggaatgggtccacagggaccaaatatgggtcaaggaatgcca
ccacagggtcaaggaatgggtcaagggatgccacctcaaggacagaacatgggacaagga
atgccaccgcaaggacagaacatggggcaagggatgcctccacagggccagggcatgggt
cagggaatgcccagtaataaccctgccatgaataatccaatgatgtctggatcaaacgct
ggaggtaattacaatcccatgggaggacaaggaatgcatggaaattccagtatggctggc
caaagtaatatgtcaggatctcagccaatgaacacaggaatggggtcaaactctccacat
cctatgccacagggagggaccatgccacacaagatgggaggaagcatgccaccaatgggg
ggtcctaacaggccagatcagcaaggacaaccaaacatgccaaatcaaatgggtggacct
ggaggatcccaaggttcaggaagacaaactgccttcaatcaacagcagctgtctcagctt
agagctcagataatggcatacaaactactgtccagaaaccaacccatcccagataacata
aggatggcaatagaggggaaacgagggcctcaaatgcagagacccccagatccaagtggt
agacaaccaccagggcaggtcccaaactctcaagctcctcacaaccaggcctttaactca
ggcttctctgggggacaaatgacacaagccccacccaacaccagcgcagggcagctcccc
cagagaccacctggtcagcagcaaggtggttctcaagcaggcccacatggggccgctcat
ccgccatcctctcagtccgtcatgcagcagaaacagagcaagattgctcctgttgccaag
ccacagggacttaatcctattgacctactgaatgaaagggaaaacagaattgcagctaga
atttctagtagaattaaggaactgcaagacctgcctgctacaatgccagaagatatgaga
actaaagctatgattgaactgagggccttgaggcttctaaacttccagagacagctaagg
agtgaggttgtttcatgcatgagaaaggatactacactagaaactgcactgaatactaaa
gcctacaagagaaacaagagacattccctacgtgaagccagagtcactgagaaattagag
aaacagcagaaaattgaacaggagagaaagaggagagctaaacaccaggaatatctgaat
gctgttctgcaacatgctaaggaattcaaagaattccatcgcaacgttaccaataaggtt
ggaaaactcaacaaagccatgatggttcatcatgccaacacagaaagggaacagaaaaaa
gaacaagaaagattagagaaagagcgtatgaggagacttatggaggaagatgaagaaggt
tacaggaagttgattgaccagaagaaggacaagcgtcttgcctatctgctggcccagaca
gacgagtatatatctaacctgatgacactggtggctcagcacaaagaggacctgaaaaaa
aagaaacagaagcgtcgcaagaagaagagggaagataaggcagaggatggggattctaac
atgagtgagatgagagtgtctgttattgagacatccaccggcaaagtactctcaggagat
gatgccccattgacaagccaactggaaacctggttggaactgaatcctggatatgaggta
gctcctcgtgacgatggagaagaatcgggatctggagacgaggaagaggaagagcctgaa
caggaagaatcttctttacttgcaaagccagagaagatgctgcccaagctcacaagtcct
gatgacattgatgaaggtttggccaaggaagtcattacacaagcttcccaagaagtagat
gatgagtaccatcgcagtgccaccaaggctgaggagaagagctactactctgtggctcac
actgtgcatgaacacgtcacagaacaggcttctatcatggtcaatggcaaactgaaggag
taccagataaaaggattggaatggttggtgtccttgtataacaaccatttgaatggaatc
ctggccgatgaaatgggtctcgggaagaccattcagaccattggactgattacttatctg
atggaacggaaaaaagtcaatggtcctttcttgatcattgtgcccctgtcgacattatca
aattgggtattggagtttgaaaaatgggccccatctgtagttaagattgcttacaaagga
tcgcctacaactagacgcttgctggtgccacagttaaaggctgccaagtttaatgtacta
cttacaacatacgagtacatcattaaggacaaagctgctttgtctaagttgaggtggaga
tacatgatcattgatgagggacatcgtatgaagaatcaccactgtaaactgacacaggtg
ttgaacacccattactgcgcaccccaccgcctccttctgactggaacacctttacagaac
aaattgccagagttgtgggccctgttgaactttttgctaccaagtatcttcaagtcctgc
tctacatttgagcagtggttcaatgctccgtttgccatgactggagaaaaggttgagctg
aatcaggaagaaaccttgctgattatccgacgtttgcacaaggtcttgagacctttctta
ctccgtcgtcttaagaaagaggtggagtcacagcttcctgataaggtggagtatgtgatc
aagtgtgaaatgtctgccctccagagatgtgtgtatagacatatgcaggccagaggaatt
ctgcttactgatgggtcagaaaaagataagaagggccgtggtggatctaaggccatgatg
aacacgatcatgcagctgaggaagatttgtaatcatcctttcattttccaacatctggag
gaagccattgcagaacatcaaggaggcactggtgcctctatcagtggacctgacttgtat
cgaagctctggcaagtttgagttcttggaccgtgtactgcccaagctgaagactctaaac
caccgtgtcttgcttttctgtcagatgacatcactgatgagtatactggaggactatttc
ttgtacagaggatatagatacctgcgtctggatggaacaacaaaatctgaagatcgtgga
caactgctagagttgttcaaccagaaggattccccttacttcttattcttattgagtacc
agggctgggggcttaggtctgaatctgcaggctgcagacaccgtcatcatttatgattca
gattggaatcctcatcaggatctccaagctcaagacagagctcacagaattggacagaag
aacgaggtcagagtgctgcgtctgatgactgtgaactcagtggaggagaagatcctggca
gccgctcgcttcaaactgaatgtcgatgaaaaggtcattcaggccggtatgtttgaccag
aagtcccggggctatgagcggcagcagcttctacagtccattctggaaaatgaaaatgag
gaagtggaggaagaggatgaagttcctgatgatgagactatcaatcagatgttggcaaga
tctgaggacgagtttgacctttaccagaaaatggatattgagagaagaagagaagaggcc
agaaatccaaaccgaaagccgcgcttgattgaggaagccgagttgccaacatggattctg
aaagatgaaaaggaggtcgaaaggttgacttacgaagaggaggaggataaattatttgga
agaggatcgcgacagagaaaggaggttgattattctgactctcttacagagaaacaatgg
atcaaggctattgaggaaggcaatttagatgaagttgaaaccgtaaagcagaaatcaaag
aaacccaaaaagagaaagccagagaaagatgaggaatcaaagcccaaaaagaagcgaggt
cgtcccccagtggagaaactcccacccaacccccgcaagctgacctctataatgaagaag
atactggatgttgtactcaactacaaagacagagatgacagagtcctgagtgaagcattc
ttccagctgccatcaaagaaagatttgccagagtactatgagatcattgcaaagcctgtg
gattttaagaaaatcaagcaaagaattcgagatcacagatatcgcagtctggacgacctg
gagacagacgtaatgcttctgtgtgagaatgctcagtcttacaacattgagggatcactg
atctatgaggactccattgttttgaaatcagtgtttactagtgccagagagaggctggag
aaggaaggcgtgacctactcagatgataacagcagcagtaatgaggaagatgagggagag
gatgaggatggcaagggagaggatgaggaggaggaagaggaagatgaggatggtgcatct
tcaagcaaaaaacacaaaaaagacaagtccaagaagaaaaaagataaggcagagagttct
aaaaagagaaaatctcgtggcaaggctaagcccgtaatcagtgatgaagatgatgaaaca
gatgaggactatgaatga
DBGET
integrated database retrieval system
