KEGG   Magallana gigas (Pacific oyster): 105332020
Entry
105332020         CDS       T03920                                 
Name
(RefSeq) replication factor C subunit 5
  KO
K10756  replication factor C subunit 3/5
Organism
crg  Magallana gigas (Pacific oyster)
Pathway
crg03030  DNA replication
crg03410  Base excision repair
crg03420  Nucleotide excision repair
crg03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:crg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    105332020
   03410 Base excision repair
    105332020
   03420 Nucleotide excision repair
    105332020
   03430 Mismatch repair
    105332020
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:crg03032]
    105332020
   03036 Chromosome and associated proteins [BR:crg03036]
    105332020
   03400 DNA repair and recombination proteins [BR:crg03400]
    105332020
DNA replication proteins [BR:crg03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    105332020
  DNA Replication Termination Factors
   ELG1-RFC complex
    105332020
Chromosome and associated proteins [BR:crg03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    105332020
DNA repair and recombination proteins [BR:crg03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     105332020
  Check point factors
   HRAD17(Rad24)-RFC complex
    105332020
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 Rad17 RCF1-5-like_lid AAA_assoc_2 AAA_24 AAA_11 RuvB_N AAA_22 AAA_5 AAA_14 DNAX_ATPase_lid AAA_16 DUF815 DEAD AAA_30 AAA_7 ResIII PhoH Mg_chelatase AAA_2 TIP49 HAM1_N AAA_19 Gp44_lid bpMoxR AAA_28 RNA_helicase ATPase_2
Other DBs
NCBI-GeneID: 105332020
NCBI-ProteinID: XP_011432740
LinkDB
Position
3:complement(54521529..54533530)
AA seq 336 aa
MSTKEYPTTDRNNPNLPWVEKYRPKQLDELISHKDIISTIDKFVKEDRLPHLLFYGPPGT
GKTSTILAVAKQIYSPKEFNSMVLELNASDDRGIGIVRGQILSFASTRTIFKSGYKIVIL
DEADAMTRDAQNALRRVIEKFTENTRFCIICNYLSKIIPALQSRCTRFRFGPLGTDQMVP
RLQHVIQQEQCNVTEDGMKALVTLANGDMRKALNILQSTHMAHDVVNEDNVYTCVGHPLR
RDIENIINWVLNENFTSAYNNILEMKTEKGLALQDILTEVHTYVHRLDLPINVKIHLLDK
MAEVEHRLASGTNEKIQLSSLIAAFQVARDLIVQET
NT seq 1011 nt   +upstreamnt  +downstreamnt
atgtcaacaaaagagtatccaacaactgatagaaacaacccaaatttgccatgggttgaa
aagtacagacctaagcagttggatgaacttatttctcacaaagatattatctcaacaatt
gataaatttgttaaagaagacagactgccccatcttttgttttatggacctccaggaaca
ggaaaaaccagcactattcttgcagtagcaaagcagatctactctcccaaggaatttaac
tctatggtgttggagttgaatgcatcagatgatcgaggaataggtatagtgcggggacag
attctcagctttgcaagtacaagaactatatttaaatctggttataagattgtgatacta
gacgaggctgatgctatgacaagagatgcacaaaatgctttacgtagagtcattgagaag
tttacagagaacacacgtttttgcatcatctgcaattacctttcaaagatcatccccgct
ctccagtctcggtgtactcgcttcaggttcggacctctgggtactgaccaaatggtgcca
cgccttcagcatgtcatacaacaagaacaatgtaatgtcacagaggatggcatgaaagcc
ttagttactctagccaatggtgacatgaggaaagctctaaatattctccagagcacacat
atggctcatgatgtggtgaatgaagacaatgtttatacatgtgtgggccatccacttaga
agagacatagaaaacatcatcaactgggtcctgaatgagaatttcacctctgcgtacaac
aatattctagaaatgaagacagaaaaaggtctggctcttcaagatatcctgacagaagtt
catacatatgtacatagacttgacttaccaattaatgtaaaaattcatcttctggacaaa
atggcagaagtagaacataggctggcctctggcaccaatgaaaagatccagctttcatct
ctgatagctgcattccaagtagctcgagatctcattgttcaagaaacataa

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