Magallana gigas (Pacific oyster): 105332581
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Entry
105332581 CDS
T03920
Name
(RefSeq) CCR4-NOT transcription complex subunit 3 isoform X3
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105332581
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crg03019
]
105332581
Messenger RNA biogenesis [BR:
crg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105332581
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
105332581
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF6987
COG6_N
Chromo_2
DUF948
DUF745
Motif
Other DBs
NCBI-GeneID:
105332581
NCBI-ProteinID:
XP_011433525
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Position
7:45505431..45522515
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AA seq
755 aa
AA seq
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MADRRKLQGEIDRCLKKVQEGVESFEDIWQKVHNAANTNQKEKYEADLKREIKKLQRLRD
QIKTWCASSDIKDKRCLVENRKLIETQMERFKVVERETKTKAYSKEGLGAAAKLNPAAKE
KSEMTNWLSQTIDNLNIQLDQFESHVEKLTSKKKKMDKDKQDRLEELKGYMEKHKYHLKQ
LETILRMVDNDAIPLDQIKKIKDDVEYYVDFNQEPDFEENEFLYDDLDLEDLVGAQLLAS
SPPNDDINMETLSSTPTSTNSSSPSPSPSLSLNHSKEKSDDERKRHKSQNDEKSIPVISS
PSSTNSSSSSVPLNIKVPSTPTKLFQGNSSTIESSNSNHRPDSTPPPLTGFSSVAASSQQ
NNNTGITIPRLPVSSTVWQGDSSPMKLSYLTDRFVKRDTKNQVNAMDHSALNSNLTVNSS
MSSVTHSNSNSVSVTSVGNPSLVPAPSPLFTNNGTTVPYSISMPMVVSNSVPTSNSHISQ
TTNGPNSLPPSTEVVMNGPLSAGAPGLKGISSMDDSNSESMSSLKSIAQQAVVNAGLENQ
IPTPPPMSTESRLQFSSSTSLPTTIPTSSQVVSQSTSLSPSDQTSQQPQTTTIHLNPLLG
VAPLGPVPLSRENFYQLQMLEAAYHHLPHPSDSERQRSFLPRNPCPTPSYYPQLPPPSAD
SVEFFQRLSTETLFFIFYYMEGTKAQYLAAKALKKQSWRFHTRYMMWFQRHEEPKTITED
YEQGTYIYFDYEKWCQRKKEGFTFEYRYLEDRDLN
NT seq
2268 nt
NT seq
+upstream
nt +downstream
nt
atggctgataggcggaagctacaaggtgaaattgacagatgccttaaaaaagtacaagag
ggagtagaatcctttgaagacatctggcaaaaggtgcataatgcagcaaacacaaatcaa
aaagaaaaatatgaagcagatctcaaaagagagattaaaaaactgcagcgtctacgtgac
cagatcaaaacgtggtgtgctagcagtgacatcaaagacaaaagatgtctggttgagaac
aggaaactcattgagacgcaaatggaaagattcaaagtggttgaaagagaaaccaaaact
aaggcatactctaaggagggacttggggctgctgcaaaactaaaccctgcagctaaggag
aagtcagagatgaccaactggctctcgcaaaccattgacaatttgaatattcagttagat
cagtttgaaagtcatgtggaaaagttaacatcaaagaagaaaaagatggacaaagacaaa
caagatcgactcgaggaacttaaagggtatatggaaaagcataaataccatctaaagcag
ttagagaccattcttcgaatggtagacaatgatgctattcctctggatcagattaagaag
atcaaagacgatgtcgagtattatgtggattttaaccaggaaccagattttgaagaaaat
gaatttctctatgacgacttggatctggaggacctagtaggtgcacagttgcttgcatct
tcaccaccgaatgatgacatcaacatggagacgttatcaagtactccaacttcaacaaat
tcaagttcaccctctcccagtcctagtctgagtttgaatcattccaaagagaagtcagat
gatgagaggaaaagacacaaatcacaaaacgatgaaaagtcaatacctgtgatttcttct
ccatcctcaacaaattcatcttcatcatcagttcctctcaatatcaaagttccatcaacg
cctacaaagttattccaagggaattcctcaacaatagaaagttcaaatagcaatcatcgt
ccagattccacaccgccacccctgacaggattctcctcagtagcagccagttctcaacaa
aacaacaatacaggtataaccattccaaggttacctgtcagttcaactgtatggcagggg
gatagttcccccatgaagctttcttacttaactgaccgttttgttaaaagggatacaaaa
aatcaagtgaatgcaatggaccactcggctttaaatagtaatttgacagtgaacagcagt
atgtcatccgtgacgcactcaaattcaaactctgtctcagtgacttctgtaggaaatccc
tctttagtgccagccccatcaccattgtttacaaataatggaacaacagtgccctattca
atttcaatgccaatggttgtatcaaacagtgtaccaacaagcaactcacacataagtcag
acaacaaatggacccaactcacttccaccctcaaccgaggtagttatgaacggacctttg
agtgcaggggcaccaggattaaaggggatcagtagcatggatgacagtaactcagaatcc
atgtcttcattaaagtctatagcacagcaagcagtggtcaatgcgggtctagagaatcag
ataccaacgcctcctcccatgtcaacagaatcgagattgcaatttagtagttccacgtcg
ttgccaacgacaataccaacttcgtcacaagtggtgtcacaaagtacgtcattatcaccc
agtgatcagacgtcgcaacaaccgcaaaccaccactattcacctcaacccacttttaggc
gtggcgcctcttggtccagtacctctcagcagggaaaacttttaccaattacagatgtta
gaagctgcatatcaccacttaccacatccctcagattcagaaaggcagaggtccttcctt
ccccgaaacccttgtccaacaccctcctactacccacaactgccccctcccagtgcagac
tctgttgagttttttcaacgactatccacagaaacactcttctttatattttattatatg
gagggtacaaaagctcaatatttggcagcaaaggctttaaaaaagcaatcctggcgattt
catacacggtatatgatgtggtttcagcggcatgaggagccaaagacaataacagaggat
tatgaacagggcacatacatttattttgactatgagaagtggtgccaaaggaaaaaggaa
ggttttacatttgaataccggtatctggaggacagagacttgaattaa
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