KEGG   Magallana gigas (Pacific oyster): 105333111
Entry
105333111         CDS       T03920                                 
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
  KO
K12828  splicing factor 3B subunit 1
Organism
crg  Magallana gigas (Pacific oyster)
Pathway
crg03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:crg00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    105333111
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:crg03041]
    105333111
   03036 Chromosome and associated proteins [BR:crg03036]
    105333111
Spliceosome [BR:crg03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    105333111
 Complex B
    105333111
 Complex C
   U2 SnRNP specific factors
    105333111
Chromosome and associated proteins [BR:crg03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    105333111
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT_EF3_N HEAT_ECM29 HEAT Htt_N-HEAT_1 HEAT_2 Vac14_Fab1_bd XMAP215_CLASP_TOG UNC45-central DUF2298
Other DBs
NCBI-GeneID: 105333111
NCBI-ProteinID: XP_011434242
UniProt: A0A8W8M508
LinkDB
Position
10:complement(26635111..26650909)
AA seq 1339 aa
MAALTREAIEEEVRNIQNKKKALETKGVELDEEEAERVGLGATGHYDQDIYSNSGKTSLL
GYDTSIAASEERDDEDDSSTVFQPKMSSYTAPLNFLNDTLNDKDFDPMQEHRPQRVRDRE
GTYRAQLKNRIISPERYDPFANGGKTPDVNDRTFANVMRSSALDREKDAYEKQIKEKAKA
GELRVVNGGDAQKAAAAAAAEKKKRRWDQAAEDSGGKKAKTSWESAETPSNTRWDETPGR
KTGAETPGATPGQSTRMWDATPGHLTPGATTPGRDAGTPGHQASSARRNRWDETPRTERE
TPGHGSGWAETPKTDRGGDLIQDTPTPGASKRRSRWDETPGAQTPSMTPSAMTPSMTPGN
QTPGGSTPSGFTPGGSTPSGFTPGGITPSGTTPTGAKAMAMATPTPGHLMSMTPEQLQAY
TWQREIDERNRPLSDDELDSLFPPGYKVLQPPAGYIPIRTPARKLIATPTPMAGTPAGFR
MQTPDTKTQIVDMQPKGNLPMMKPDDMQYFDKLLVEVDEETLSPEEQKERKIMKLLLKIK
NGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDD
LVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNLDEYVR
NTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLKN
LVEIIEHGLVDEQQKVRTITALALAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAA
FLKAIGYLIPLMDAEYANYYTREVMLILKREFQSPDEEMKKIVLKVVKQCCATDGVEPQY
IKDEILPTFFKHFWNQRMALDRRNYRQLVDTTVEIANKVGAAEIIQRIVDDLKDEAEQYR
KMVMETIEKIMGNLGAADIDSRLEEQLIDGILYAFQEQTTEDVVMLNGFGTVVNALGKRV
KPYLPQICGTILWRLNNKSAKVRQQAADLISRIAVVMKTCQEERLMGHLGVVLYEYLGEE
YPEVLGSILGALKGIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADR
GAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQE
RQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFMFEYIGEMGKDY
IYAVAPLLEDALMDRDLVHRQTSMSAIQHIALGVYGFGCEDALTHLLNYVWPNIFETSPH
VVQAFMGSIEGMRVGIGPSKILQYALQGLFHPARKVRDVYWKVYNTVYIGAQDGMIPAYP
RVPNDQKNNYVRYELDYIL
NT seq 4020 nt   +upstreamnt  +downstreamnt
atggctgccctcacacgggaagccatagaggaagaagtgcgaaacattcaaaataagaaa
aaggccttagaaaccaaaggcgttgagttggatgaagaggaggcagagagggtcggtttg
ggggcgacaggccattatgaccaggacatttacagcaacagtgggaagacgtccctgctt
ggatatgacacatccattgcagcaagcgaggagagagatgatgaggacgactccagcaca
gtctttcaaccaaagatgtcgtcttacacagccccactcaatttcctaaacgacacactg
aatgacaaggattttgatcccatgcaagagcacagaccacaaagagttcgagacagagaa
ggaacatacagagctcaactgaagaacaggatcatctcccctgagcgttacgacccgttc
gctaatggcggaaaaacacctgatgtcaacgacagaacatttgccaatgtcatgagaagc
tctgctttggacagagaaaaggatgcgtatgagaaacaaataaaagagaaagcgaaagct
ggggaactgcgtgtggtgaatggcggcgatgcccagaaagcggctgctgcagccgctgca
gaaaaaaagaaacgccgttgggatcaagccgcagaagactctgggggcaagaaagccaaa
acgtcctgggagtctgctgagaccccctccaacacacgctgggacgaaactccaggccga
aaaacgggggctgaaacacctggcgccactcctggtcagagtacaaggatgtgggatgcc
acacctggtcacctgacccctggagccaccaccccagggagggatgctggtactcccggg
catcaagcttctagcgccaggaggaacagatgggatgagactcccagaaccgaaagagag
actcctggacatggcagtggatgggcggagacccctaaaactgaccggggaggagacctg
atacaggacacccccacccctggggccagcaagagaaggtccagatgggacgaaacccct
ggggcacagaccccctcaatgacccccagtgcaatgactcctagcatgaccccaggtaat
cagacacctggaggatcaactccaagtggtttcacccccggaggttccacccccagtggg
tttaccccaggcggcatcactccaagtgggacaacacctactggagccaaagctatggcg
atggccacacccaccccaggtcacctgatgtcaatgaccccagagcagttacaggcgtac
acctggcagagggagatagacgagaggaaccgccccctctccgacgacgagttggactcg
ttgttcccgccgggatacaaggttctccaaccccctgcagggtacatccccatccgtacc
ccagcacgtaagctgattgcaacccccacccccatggccgggactccggcagggttcagg
atgcagacccccgacacaaagacccagattgtggacatgcagcccaaggggaacctgccc
atgatgaagccagacgacatgcagtactttgacaagctgctagttgaagtggatgaagag
acgttatcaccagaggaacagaaagagagaaaaatcatgaaacttctactaaagatcaag
aacggaactcctccaatgagaaaggctgccctccgacagatcacagacaaggcgcgcgag
tttggggcggggccacttttcaatcagatcctgcccctcttgatgtccccgaccctggag
gaccaggagcgtcaccttctggtcaaggtcattgaccgcatcctgtacaaactggacgac
cttgtgcggccctacgtccacaagatcctggtcgtcatcgagccgctgctgatcgacgag
gactactacgccagagtggagggcagggaaatcatctctaacttggcaaaggctgcaggt
ttggccaccatgatctccacaatgagacctgacattgacaacttggacgagtacgtccgt
aacacaactgccagggccttcgctgttgtagcctcggccctggggatcccctccctgctg
cccttcttgaaggccgtgtgtaagagcaagaagtcatggcaggccagacacacaggaatc
aagattgtccaacagatcgctattctcatggggtgtgccatcctcccccacctcaagaac
ttagtagagattattgaacatggactggtggatgagcaacagaaggtccgtaccatcact
gccctggccctggccgccctggctgaagctgccaccccctatggtatcgagtccttcgac
agcgtgctcaaaccactgtggaagggtatccgacagcacagaggaaagggtctggctgcc
ttcctgaaggccatcggttatctgatccctctcatggacgccgagtacgccaactactac
actagggaagtgatgctcattctgaagagagagttccagtctcctgatgaagagatgaag
aaaatcgtactgaaggtggtgaagcagtgctgtgctacagatggtgtagagccccagtac
attaaggatgagatcctgcccacattcttcaaacatttctggaaccagaggatggctctg
gacagaaggaactacagacagttggtggacaccactgtggagattgccaacaaggtcgga
gcagcggaaatcatccagcggattgtggatgatctgaaggatgaggcggaacagtacagg
aagatggtgatggaaaccatcgagaagatcatggggaacctcggagcggctgacattgac
tcgcgactggaggaacagctgattgacggtatcttgtacgcctttcaggaacagaccaca
gaggatgtggtgatgttgaacggtttcggaacagtggtgaatgccctgggcaagcgggtg
aagccgtacctaccacagatctgtggtaccattctgtggcgtctcaacaacaagtcggcc
aaagtccgacagcaggccgccgatctcatctccaggatcgccgtcgtcatgaagacctgt
caggaggagcggctgatgggtcacttgggagtggtgctgtacgagtacctgggagaggag
taccccgaggtactgggcagtatcctgggggccctgaagggcattgtcaatgtgatcgga
atgaccaagatgactccaccaatcaaagatctcctcccccgtctcacccccatcctcaaa
aataggcacgagaaggtacaggagaactgtatagacctggtgggtcggatcgctgaccgc
ggggccgagtacgtgtctgctcgtgagtggatgaggatctgctttgagttactagagctg
ctgaaggctcacaagaaggctattcgtagggcaaccgtcaacacgttcggctacattgcc
aaagctattggtccacacgatgtgttggccactctcctcaataatctcaaggtccaagag
agacagaaccgagtgtgtactactgttgccatagcgatcgtagccgagacctgctccccc
ttcaccgtgctccctgcactgatgaacgagtaccgagtgcccgaactcaacgttcagaac
ggtgtgttaaaatccctctcattcatgttcgagtacatcggagaaatgggcaaagactac
atctacgcggttgctccacttcttgaagatgctttgatggacagagatctcgtgcacaga
cagacttcgatgtcagcaatacagcacattgccctcggggtttacggcttcggctgtgag
gatgctctcactcatctgttgaactatgtgtggccaaacatttttgagacgtcccctcac
gttgtgcaggctttcatgggctccattgaaggcatgagggtgggaatcggtccaagcaag
attttacaatatgccctacagggtctgttccacccagcccgtaaggtgcgagacgtttac
tggaaggtctacaacacagtgtacatcggagcccaggacggaatgattcccgcctatccc
agggttccaaacgaccagaagaacaactacgtccgctacgaactggattatatcttataa

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