KEGG   Magallana gigas (Pacific oyster): 105333380
Entry
105333380         CDS       T03920                                 
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
crg  Magallana gigas (Pacific oyster)
Pathway
crg03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:crg00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    105333380
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:crg03021]
    105333380
   03036 Chromosome and associated proteins [BR:crg03036]
    105333380
Transcription machinery [BR:crg03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     105333380
   Coactivators
    SAGA/TFTC/STAGA complex
     105333380
Chromosome and associated proteins [BR:crg03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     105333380
    STAGA complex
     105333380
    TFTC complex
     105333380
    SAGA complex
     105333380
    SLIK complex
     105333380
SSDB
Motif
Pfam: Beta-prop_IFT122_1st WD40 Beta-prop_WDR5 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_Prp19 Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_WDR3_2nd WD40_CDC20-Fz Beta-prop_WDR36-Utp21_2nd WD40_Gbeta Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_TEP1_2nd WDR55 TFIID_NTD2 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_WDR36-Utp21_1st DSE1_N WD40_MABP1-WDR62_1st Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_IFT140_1st ANAPC4_WD40 CFAP251_N ASA1 Beta-prop_WDR41 Beta-prop_VPS8 NBCH_WD40 Beta-prop_RIG_2nd Beta-prop_SCAP Beta-prop_Vps41 WDR90_beta-prop_4th Beta-prop_NOL10_N Beta-prop_EIPR1 Beta-prop_Aladin Beta-prop_DCAF4 Beta-prop_SPT8 PROPPIN WD_LRWD1 Tricorn_2nd PAC11 Beta-prop_HPS5 Beta-prop_Nup120_160 WD40_RFWD3 WDR54 Beta-prop_WDR19_1st TRM82_WD Beta-prop_WDR35_TULP_N Beta-prop_DCAF12 Beta-prop_NWD2_C PEP5_VPS11_N Nucleoporin_N DUF1281 Nbas_N Bt_P21
Other DBs
NCBI-GeneID: 105333380
NCBI-ProteinID: XP_011434614
LinkDB
Position
5:47456187..47463566
AA seq 583 aa
MKRVRHEQINLSVHHYLKRRQFLDHESSQKKDSRWAQTISDMAVNNASNGEITVDNLLTY
SSISGDASSCDEQFSRLKAYINKGSEPYRSQLQPLLYPLFVHLYLDQLCNGHKTPAHRFY
SKHLKLFENEKSFTHTLESIHKLYNQSDVSGCLEATDFRENKFKIKLSEEALEYLLRHLK
HEDNSTIYQIFNQHIKLENTVDNEAKGKLDLTEGLSTTKEESFEIKEDPEHLEAMSALQL
SIRQVREGPPCLPSICFYTFINAYQGLCTVDISPDKTLISAGFEDASIKLWSTTPSLLQS
TPQTVDPCKLYIAADYWNVDVLEESKPRYTETVTLRAHSGSVYKTCFSTDSKHLLSASED
ATVRLWDMSTHTNKVCYKGHNAPIWDLDVGSIGGYFASSSQDRTAKLWVSDRIYPVRTFA
GHNLDVDCVKFHPNCNYLATGSSDRSVRLWTLQDGKSVRLMHGHRGTIMTLTFSPNGNYL
ASAGEDKRIRVWDLSSGQLYKELKGHTDTIHSLSFSGDSTLLASGGMDCTIKVWDIRKGV
ASSSSHSDGISSPELLGSFSAKSAVVTYLQYSEHNVLRGAGAV
NT seq 1752 nt   +upstreamnt  +downstreamnt
atgaagagggtacgccatgagcagataaatttatctgttcaccattacttgaaacggaga
cagtttctagaccatgaaagttctcaaaagaaggattcgcgatgggcccaaactattagt
gatatggcagtgaacaatgccagcaatggtgagataactgttgacaatcttctgacctac
agtagcatcagtggggatgccagttcatgtgatgaacaattctccaggttaaaagcatac
ataaacaaaggaagtgaaccatacaggagccagcttcagcccctgttgtacccgttgttt
gttcacctgtaccttgatcagttgtgcaatggacacaaaacaccagctcatcgattctac
agtaaacatttgaagttgtttgagaatgagaagtccttcacccacacacttgaatctata
cacaagttgtacaaccaatctgatgtgtcaggttgtctagaggcaacagatttcagggag
aataaattcaaaataaagttatcagaggaggctttggaatatttacttagacatttaaag
catgaagacaacagcacaatatatcaaatttttaatcaacatatcaagttagaaaataca
gttgacaatgaagccaaaggaaagctggatttaaccgagggcttgagtacaacaaaggag
gagtcttttgagataaaggaagatccagagcacttggaggctatgtcagcattacaactg
tcaatcagacaagtgagggaggggcctccatgtctaccctccatttgtttctacacattc
atcaatgcataccaagggctgtgcactgttgatatctcacctgataaaaccctcattagt
gctgggtttgaggatgcttctatcaagctttggagcaccacccctagtctcttgcagtcc
accccccaaacagtggacccttgtaaactgtacatagcagccgattactggaacgtggac
gttttagaagaaagtaagccccgctacacagagacggtgaccctgagggcccacagcggc
tctgtctacaagacctgcttctccacggactccaagcacctgctgtctgcatcagaggat
gctacagttcggttgtgggatatgagcacacataccaacaaagtgtgttataaaggtcat
aatgctccaatttgggatctagatgttggaagcattggcgggtactttgccagcagttca
caagaccgcacagccaaactgtgggtcagtgacaggatttatccagtacgcacatttgct
gggcacaacctggatgtagattgtgtcaagttccatcctaactgtaattatctggccacc
ggttcctctgaccgctcagtccgcctctggacgctacaggacgggaagtctgtgcgactg
atgcacggccacagaggaaccatcatgacactgacattctcacccaacggaaactaccta
gcatctgcaggtgaagataagagaataagagtgtgggacctgagctctggacagctgtac
aaggaactgaagggtcacaccgacaccatacactccctgtcctttagtggagacagcacc
ctgctggcctcaggtgggatggactgtacaataaaagtctgggacatcaggaaaggcgtg
gccagtagcagttcccactcagatggaatttcatcccctgaactgctaggatccttttcc
gcaaaatctgcggtggtgacttatttacagtattcagagcacaatgtactcagaggagca
ggggcggtgtga

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