Magallana gigas (Pacific oyster): 105333380
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Entry
105333380 CDS
T03920
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
105333380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
crg03021
]
105333380
03036 Chromosome and associated proteins [BR:
crg03036
]
105333380
Transcription machinery [BR:
crg03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
105333380
Coactivators
SAGA/TFTC/STAGA complex
105333380
Chromosome and associated proteins [BR:
crg03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
105333380
STAGA complex
105333380
TFTC complex
105333380
SAGA complex
105333380
SLIK complex
105333380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_EML_2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_TEP1_2nd
WDR55
TFIID_NTD2
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
ANAPC4_WD40
Beta-prop_RIG_2nd
NBCH_WD40
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_Vps41
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_SPT8
PROPPIN
WD_LRWD1
Beta-prop_HPS5
WD40_RFWD3
Beta-prop_Nup120_160
WDR54
Beta-prop_WDR19_1st
Beta-prop_WDR35_TULP_N
Beta-prop_DCAF12
Beta-prop_NWD2_C
PEP5_VPS11_N
Mala_s_1-like
Nbas_N
Bt_P21
Motif
Other DBs
NCBI-GeneID:
105333380
NCBI-ProteinID:
XP_011434614
LinkDB
All DBs
Position
5:47456187..47463566
Genome browser
AA seq
583 aa
AA seq
DB search
MKRVRHEQINLSVHHYLKRRQFLDHESSQKKDSRWAQTISDMAVNNASNGEITVDNLLTY
SSISGDASSCDEQFSRLKAYINKGSEPYRSQLQPLLYPLFVHLYLDQLCNGHKTPAHRFY
SKHLKLFENEKSFTHTLESIHKLYNQSDVSGCLEATDFRENKFKIKLSEEALEYLLRHLK
HEDNSTIYQIFNQHIKLENTVDNEAKGKLDLTEGLSTTKEESFEIKEDPEHLEAMSALQL
SIRQVREGPPCLPSICFYTFINAYQGLCTVDISPDKTLISAGFEDASIKLWSTTPSLLQS
TPQTVDPCKLYIAADYWNVDVLEESKPRYTETVTLRAHSGSVYKTCFSTDSKHLLSASED
ATVRLWDMSTHTNKVCYKGHNAPIWDLDVGSIGGYFASSSQDRTAKLWVSDRIYPVRTFA
GHNLDVDCVKFHPNCNYLATGSSDRSVRLWTLQDGKSVRLMHGHRGTIMTLTFSPNGNYL
ASAGEDKRIRVWDLSSGQLYKELKGHTDTIHSLSFSGDSTLLASGGMDCTIKVWDIRKGV
ASSSSHSDGISSPELLGSFSAKSAVVTYLQYSEHNVLRGAGAV
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atgaagagggtacgccatgagcagataaatttatctgttcaccattacttgaaacggaga
cagtttctagaccatgaaagttctcaaaagaaggattcgcgatgggcccaaactattagt
gatatggcagtgaacaatgccagcaatggtgagataactgttgacaatcttctgacctac
agtagcatcagtggggatgccagttcatgtgatgaacaattctccaggttaaaagcatac
ataaacaaaggaagtgaaccatacaggagccagcttcagcccctgttgtacccgttgttt
gttcacctgtaccttgatcagttgtgcaatggacacaaaacaccagctcatcgattctac
agtaaacatttgaagttgtttgagaatgagaagtccttcacccacacacttgaatctata
cacaagttgtacaaccaatctgatgtgtcaggttgtctagaggcaacagatttcagggag
aataaattcaaaataaagttatcagaggaggctttggaatatttacttagacatttaaag
catgaagacaacagcacaatatatcaaatttttaatcaacatatcaagttagaaaataca
gttgacaatgaagccaaaggaaagctggatttaaccgagggcttgagtacaacaaaggag
gagtcttttgagataaaggaagatccagagcacttggaggctatgtcagcattacaactg
tcaatcagacaagtgagggaggggcctccatgtctaccctccatttgtttctacacattc
atcaatgcataccaagggctgtgcactgttgatatctcacctgataaaaccctcattagt
gctgggtttgaggatgcttctatcaagctttggagcaccacccctagtctcttgcagtcc
accccccaaacagtggacccttgtaaactgtacatagcagccgattactggaacgtggac
gttttagaagaaagtaagccccgctacacagagacggtgaccctgagggcccacagcggc
tctgtctacaagacctgcttctccacggactccaagcacctgctgtctgcatcagaggat
gctacagttcggttgtgggatatgagcacacataccaacaaagtgtgttataaaggtcat
aatgctccaatttgggatctagatgttggaagcattggcgggtactttgccagcagttca
caagaccgcacagccaaactgtgggtcagtgacaggatttatccagtacgcacatttgct
gggcacaacctggatgtagattgtgtcaagttccatcctaactgtaattatctggccacc
ggttcctctgaccgctcagtccgcctctggacgctacaggacgggaagtctgtgcgactg
atgcacggccacagaggaaccatcatgacactgacattctcacccaacggaaactaccta
gcatctgcaggtgaagataagagaataagagtgtgggacctgagctctggacagctgtac
aaggaactgaagggtcacaccgacaccatacactccctgtcctttagtggagacagcacc
ctgctggcctcaggtgggatggactgtacaataaaagtctgggacatcaggaaaggcgtg
gccagtagcagttcccactcagatggaatttcatcccctgaactgctaggatccttttcc
gcaaaatctgcggtggtgacttatttacagtattcagagcacaatgtactcagaggagca
ggggcggtgtga
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