Magallana gigas (Pacific oyster): 105333885
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Entry
105333885 CDS
T03920
Name
(RefSeq) PAN2-PAN3 deadenylation complex subunit pan3 isoform X1
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105333885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crg03019
]
105333885
Messenger RNA biogenesis [BR:
crg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105333885
mRNA degradation factors
3'-5' decay
Pan complex
105333885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pan3_PK
zf_CCCH_4
Pkinase
zf-CCCH
zf-CCCH_4
zf-CCCH_9
zf-CCCH_2
Torus
Motif
Other DBs
NCBI-GeneID:
105333885
NCBI-ProteinID:
XP_034317559
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All DBs
Position
2:276009..291114
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AA seq
798 aa
AA seq
DB search
MTSSNPAGRKPALCRFFVNTGNCVYGDECQFLHQNPGMGFQKPFSNGPMHSSENHGLPDS
LGNNGDQYFNATFGGESTVPEFNPFSRPPMGRPGRGMIGPSGPGPNFGPNNPRMDLAAGE
GRLDCPPGGPMRMDNFRSDNPRMDHGLASDFAALNLQIPNTTKGPNPIANEFIPKSSSLS
HSASSPNFSTINGNGYIPPHSNGPPPPPPMMISGQPENHSVVAGAPPNSMMMSNTPPPHL
VPTSGVSLATTSPSHSPHLSPSNSPLMMRRTASPIAPLKQTTTPKKSNNTTIQENVGGTT
YFYSPDDFNPQHEATQLPNFSMFPSLPPHIAHLTVKKNMPQFFMPDELKMDILNRHALTM
AQLDTTQTTDIPAEVDNYHNLFPLEPPLANPMQKSNTFGYPTTCYKAVNTKDGLTYCLRR
VHGFRLSNTKCMSIIDMWKKMYHPNIVQLREVFTTKAFGDNSIVFVYDFFPGAETVLLKH
FSGPGGMNGYTNAFNMEGGSSSRSYNSSNKGLNGPRQHAGLLPESMIWAYVVQLSSALRA
IHAAGLAFRTMDPSKILIYSKSRIRLNCVGILDVLTFDSQGNPPSAIQHYQQEDLVYLGK
VVLALACNTVMAIKRDNFQNSMELIARNYSADLKNFFLYLLTNQTRPRSINDIMPMIGAR
FYTQLDSAQLRSDVIENELTKEVENGRLFRLLAKLGTINERPEYNLDMQWSETGDRYMLK
LFRDYLFHQVDQTGAPWIDMAHIVQCLNKLDSGSPERICLTSRDEQSVLVVSYAELKQNY
ERAFSELLSSSQSHSTFT
NT seq
2397 nt
NT seq
+upstream
nt +downstream
nt
atgacatcttcaaatccagccggaagaaagccggctctgtgccgtttcttcgtgaatact
gggaactgtgtttacggggatgagtgtcagtttctccaccagaacccaggaatgggattt
caaaaaccgttttcaaacggaccaatgcattcttcggaaaatcatgggttaccagattcc
ttaggaaacaatggagaccagtacttcaatgctacgtttgggggggaatcaactgtgcca
gagtttaaccccttttctaggccccctatgggccggcctggcagggggatgattggcccc
tctggtcccggaccaaactttggtcctaacaatccccgcatggacctggccgctggggaa
gggagacttgactgtcctccagggggacctatgaggatggacaactttaggtcagataat
ccaagaatggatcatggattagcttcagacttcgcagctttaaatctgcagattccaaac
accacaaagggaccaaaccctattgccaatgagttcatcccaaagtcctccagtctcagt
cacagtgccagttctccaaacttctccaccatcaatgggaacggatacatcccccctcat
tctaatgggccacccccacctcccccaatgatgatatctgggcagcctgaaaaccacagt
gtggtagctggggcaccaccaaacagtatgatgatgtcaaacactcctccaccacatcta
gtgcctaccagtggcgtcagccttgctacaaccagtccaagtcacagtcctcatctgtct
ccctccaactcgcccctgatgatgcgacggacagcctcgcccatcgcccccctcaagcaa
accaccactcccaagaaatcaaacaacaccaccattcaggagaatgttggtggcaccaca
tacttttactcccctgatgacttcaatccccagcatgaggccactcaactgccaaacttc
tccatgttccccagtctgccaccccacattgctcatttaactgtcaaaaagaacatgcca
cagttctttatgccagatgaacttaaaatggacatcttaaacaggcatgctttaacaatg
gcacaactagacacaactcaaaccacagatattcctgcagaagtggacaactatcataat
ctgttccccctggagcccccgttggctaacccaatgcagaaatccaacacgtttgggtac
cccaccacctgttacaaggcagtcaacacaaaggacggcctcacctactgcttacgcagg
gttcacggttttcgattgtccaacacaaagtgtatgagcatcattgacatgtggaagaag
atgtaccatcctaacatagtccagctgagggaggtctttaccacaaaagcctttggagac
aattctatagtatttgtgtacgactttttcccgggagcagaaacagttttgttgaagcat
ttcagtggacctggagggatgaatggctataccaacgcctttaacatggagggtggcagt
tcatctaggtcctacaactctagcaacaaaggtctgaatggaccgagacaacacgctgga
ctacttccagagagtatgatttgggcttacgtagtccagcttagctccgccttgcgcgcc
attcacgctgctggtctggcctttagaacgatggaccccagcaaaatcttaatctacagc
aaatcaaggataaggttgaactgtgtgggtatcctggatgtgttgacatttgacagtcag
ggaaacccaccttctgctatccaacactatcagcaagaagacttggtgtacctgggtaag
gtggtgctggccctggcctgtaacacggtgatggccatcaagcgagacaacttccagaac
tcaatggaactcatcgccaggaactactcagctgacctgaagaactttttcctatacttg
ttaaccaatcagactcggcctcgcagcattaatgacatcatgccaatgataggggctcgt
ttttatactcagctggactcggctcaactcaggagtgatgtcattgaaaatgaactgaca
aaggaagtggagaatggacgcttgtttcgacttttagcaaaactgggaactatcaacgag
agaccagaatacaaccttgacatgcagtggtcagagacaggggaccgctacatgctgaag
ctgttcagggattacctgtttcaccaggtggatcagacaggtgctccatggatagacatg
gcccacattgttcagtgcctcaataagttggactctggatcccctgagaggatttgtttg
acatctcgtgatgaacagagcgtgttggtcgtgtcctatgctgaactcaagcagaactat
gagcgagctttcagtgagctgctatcatccagtcagagtcactccacatttacgtag
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