Magallana gigas (Pacific oyster): 105334365
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Entry
105334365 CDS
T03920
Name
(RefSeq) retinoic acid receptor RXR-alpha-B
KO
K08524
retinoid X receptor alpha
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
105334365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
crg03000
]
105334365
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
crg03310
]
105334365
Transcription factors [BR:
crg03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
105334365
Nuclear receptors [BR:
crg03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
105334365
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
UPF0176_N
Motif
Other DBs
NCBI-GeneID:
105334365
NCBI-ProteinID:
XP_011436094
UniProt:
A0A8W8KY28
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Position
2:complement(15572729..15579484)
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AA seq
482 aa
AA seq
DB search
MAEPRLGILSSKIENMQQVDENSPHFGFGVSDSNNQGRMQSPNGRGRNIQYQGTGDYSSE
NVDTNFHMDMDNPQSSGSENMTPDIIGSPEIQIHSEGMPMSSVSQGSVHSPSNEHVVQPI
IQVTGVNDDTQVYTGGEDSPSNASPCMICNDRGSGYHYSVFSCEGCKGFFKRSVQKNLVY
TCKNEGSCVINKFTRNNCQYCRFVKCTQMGMKREAVREDRSPGGKHRNKKPRLDEIRAMV
SSDGEVLFVPGTQESKPTESFEDPIMEGLINARPDLIPRVDGNICLQSMGINQLMQYGYA
ELKYIIDWAKKVPGFTELRLEDQMALLKSSFMELNVLRLSYRSMETGSCIKFAEGLKVPI
ELAQKMGWGKELVAATVEFSARLKELSIDKVEFCILNGIVLTYPDAQNLMDKQKVILLQT
QILDRLRKYHSHKFPGNVRRYGKMLLRLPFLRTVSAKAAERFLSLTLDGTLQLNELVLEM
IN
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaccaaggcttggaattttgagttcaaaaattgagaatatgcaacaagtagat
gaaaattctccacactttggttttggtgtatctgacagcaacaatcaagggaggatgcag
tcgccaaatggcaggggcagaaacatacaataccagggtactggtgattattcaagtgaa
aatgtggatacaaatttccacatggatatggacaatcctcaaagtagtggttcggagaac
atgacaccggacattatagggtctccagaaattcaaattcacagtgagggaatgccaatg
tcgtctgtcagtcaaggctctgtacactcccccagcaatgaacatgtggtacagcccatc
atacaggtcacaggtgtcaatgatgacactcaggtgtacacaggtggagaagactcgcca
tccaatgcctctccctgcatgatttgtaatgaccgggggtctggctaccattattctgtt
ttctcttgtgaaggatgtaagggattcttcaaacgaagtgtccagaagaacttggtatac
acctgtaaaaatgaaggaagttgtgtcatcaataaattcaccagaaataattgccagtac
tgtcgctttgtgaaatgcacacaaatgggcatgaagagagaagcggttcgtgaggacaga
tcccctggagggaaacacagaaacaagaagccccgattggatgaaatccgtgccatggta
agcagtgatggggaggtgttatttgttccggggacccaggagtcgaagccaacagaatca
tttgaggatcccataatggaggggcttattaatgccagaccagaccttataccaagagtg
gacggaaacatatgtttacaaagtatgggtataaatcaactgatgcagtatggttatgct
gaactgaaatacatcattgactgggccaagaaggtgcctggtttcacagagttgcgtcta
gaagatcagatggctttgttgaagtcttctttcatggagctcaatgttctgagactgtcc
tacagatcaatggaaacaggaagctgtataaaatttgcagaaggattgaaggtacccata
gagctggctcagaagatgggctggggcaaggagttagtggcagccacggtggaattttcg
gccagactgaaggagcttagcattgataaagtggagttctgtatcttaaatggcattgta
ctgacttatccagatgctcagaatttgatggataaacagaaagtcatacttctacagact
caaattttagaccgccttcgcaaatatcacagccacaaatttcctggaaatgtgaggcga
tatggtaaaatgttattacgcctaccattcctacgtactgtcagtgcaaaggcagcagaa
agatttctctcattgactctggacggaacccttcagttaaatgaactggtactggagatg
atcaactag
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