Magallana gigas (Pacific oyster): 105334588
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Entry
105334588 CDS
T03920
Name
(RefSeq) cys-loop ligand-gated ion channel
KO
K05186
gamma-aminobutyric acid receptor subunit gamma
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg04080
Neuroactive ligand-receptor interaction
crg04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
105334588
04082 Neuroactive ligand signaling
105334588
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
crg04040
]
105334588
Ion channels [BR:
crg04040
]
Ligand-gated channels
GABA-A
105334588
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Gene cluster
GFIT
Motif
Pfam:
Neur_chan_LBD
Neur_chan_memb
DUF6608
DUF5367
DUF1003
Motif
Other DBs
NCBI-GeneID:
105334588
NCBI-ProteinID:
XP_011436413
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All DBs
Position
6:9483748..9495222
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AA seq
391 aa
AA seq
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MEQENGTSSSEDIQEKVEKRKAYIKVVFLKVGEIDTLKEFFVADVFVQIRWREPSLDKPA
TEGQRMKQVLTGALKSLTQNYIEISKTKSKKFQYENYWDPKIVFQNVLSESKHSEWKVMR
HYDEGEAYIVQKHRLKATFSENLELALFPFDIQDLTLIISTELSEAEVELEEDLEEMSSV
QIDSFAKEQEWTLHECVSFTPKVTTKAYTNPKFKNPTVVAGCFAGRRAGFFIWNVMLIMT
LISSLSLATFAVDRGLPQNRLQLSFTLVLTGVAFKFVANQSIPKISYLTHLDRYILGSMI
FLYLVCIWHGVVTLIEGVAAGAEADRDAFIVFASSFACLQVMFIISVVISGYQRYSNVKK
IERKYQEKIGKRLAFEKESTKKKTRVSSMDV
NT seq
1176 nt
NT seq
+upstream
nt +downstream
nt
atggaacaagaaaatggcacaagttcgagtgaagatatccaggaaaaagtggaaaagaga
aaagcatacattaaagtggttttcctgaaggtgggagaaatagatacactgaaggagttt
tttgttgcggatgtgtttgtacagataagatggagagagcccagcctggacaagccagca
acggagggtcaacgaatgaagcaggtgctcaccggagccctgaaaagtcttacgcaaaac
tacatagaaatatcaaaaacaaagagcaagaaattccagtatgaaaactactgggaccca
aagatagtgttccaaaatgttctgagtgaaagcaaacattccgaatggaaagtaatgcgg
cactatgacgaaggcgaggcgtacattgtacaaaaacacaggctgaaagcaaccttttcc
gaaaatctggaactagcattattccctttcgacattcaggacttgaccttgatcatcagc
acagaactatcggaagcggaagttgagctggaggaggatcttgaagagatgtccagtgta
caaattgacagttttgcaaaagaacaagagtggaccctccacgaatgcgtttcttttaca
ccaaaagttacaaccaaagcttacacgaatccaaaattcaaaaacccaaccgtcgttgcc
gggtgttttgcaggaaggcgggccggattcttcatctggaatgtgatgcttatcatgaca
ttgattagttccctgtcattggcgacttttgccgtggacaggggcttgccacaaaaccgt
ctccagctgtcctttacattggttctaactggcgtggcgttcaagtttgtcgccaatcaa
tccatacccaagatatcttacttaactcatctggataggtacatcctgggtagcatgatt
tttctgtaccttgtctgtatctggcacggtgtggtgaccttgatagagggcgtcgcggcg
ggtgcagaggcagaccgtgatgccttcattgtgttcgcttccagctttgcttgtcttcaa
gttatgttcattatcagcgttgtcatcagcggttaccaaagatactcaaatgttaagaaa
attgaaagaaaatatcaggaaaaaatcggcaaacggttggctttcgaaaaagaatctact
aaaaagaaaacaagggtcagttccatggacgtgtag
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