Magallana gigas (Pacific oyster): 105335199
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Entry
105335199 CDS
T03920
Name
(RefSeq) paired amphipathic helix protein Sin3a isoform X1
KO
K11644
paired amphipathic helix protein Sin3a
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
105335199
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
crg03036
]
105335199
Chromosome and associated proteins [BR:
crg03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
Sin3A-HDAC complex
105335199
REST complex
105335199
Heterochromatin formation proteins
Other heterochromatin formation proteins
105335199
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sin3a_C
PAH
Sin3_corepress
PAH_ZNF598
HHD_RTEL1
CPDase
Tricorn_C1
Motif
Other DBs
NCBI-GeneID:
105335199
NCBI-ProteinID:
XP_011437295
LinkDB
All DBs
Position
1:50894135..50909855
Genome browser
AA seq
1323 aa
AA seq
DB search
MNTQPRRVPQGESQYPRVIAPSAQRFDIAGSTAAENLSQIQFPMHNFPTTQSHVHSSGMH
HQPNPTLPGHHGAPAGQGGSQPPIQQAHAQGPPPQAHSAASQGQQQQFQRLKVEDALSYL
DQVKLQFGNQPQVYNDFLDIMKEFKSQTIDTPGVINRVSNLFKGHPDLIVGFNTFLPPGY
KIEVQANEISVHQPGQQTLCIPTNAPVMLPSATPMPGHKLDMFSMQPKTTPPPAHMATPP
THGSSHHSYHQSPHRGAAADQIGGTTPQSHQPQPQQPQAGQPVEFNHAINYVNKIKNRFQ
GQPEIYKAFLEILHTYQKEQRNLKEGIVSPACKPLTEAEVYSQVAKLFQNQEDLLAEFGQ
FLPDANGSAYGGYLNMLQGDSSLGVRNDHSSTVKKPSLGNKSQMGKSGNQHRRPSGGPQP
PQKVSRVKGSQMSGQKQRTGTLKDISLAEAGRYGTLNEFAFFDKVRKFLKHPEVYENFLR
CLVLFNQEVISRTELVQLVQTFLQRSPELYKWFKDFLGYKESGGTTEAVPQGALGKERVS
GELAMEIDYATCKRYGASYRALPKSYPQPKCSGRSPLCREVLNDTWVSFPSWSEDSTFVT
SRKTQYEEHIYRCEDERFELDVVIETNLATIRCLEAVQKKMGRMSSEEAAKFRLDNALGG
SSDVLQRKAIQRIYGDKAPDIIDGLKKNPVVAVPLVLRRLKAKEEEWREAQRDFNKYWRE
QNEKYYLKSLDHQGINFKQNDIKAIRSKALLNEIETIYDERSEQDTETAEAFNPHLSYVY
KDRSVIEDASSLILHHMKRQAAIHKDDKHKIKLLLRQLIPDLFFSPRQEMSDDEDEDDME
TDEAVDKETTKSEEKRESERDRSSSSGKNGKDSEAGTLKIKEEKMETTEIKQEDEESKSA
DSAIINGSQDENTNDGDMEDDDIYSLFFVNNNWYLFFRLHQILCERLYKIYTYSVKIAAE
EAQCRKDRKESTAIALRLKAPSEIEPEEYYPYFLEMVKSLLDGNLESTQYEDQLREMYGI
HAYIAFTMEKLVQNLVRQMQHIVQDEVCLRITALHQEERKNGATGGRVATVHQRTVKETA
YHKRAEQSLSEENCFRIVIFKKECRLTFELMDTEHEQSDDPIEVERWSEYVEKYVSKDDT
VSDDLKEHLNRKPVFLPRNVRQWRRHQKNQKSRSDTETEEILGSPKQSTEEMDILDNTEC
KFNVNSFKIVYVVNSEYYLYKRTALTKARESHKRVSLKLHDKFSSWIEGWREENLSEDQR
ANCEDWLMGHGEDVVACTTTKEPRGDQDSTPYFSYNKYHVEYEYETKSEAGEPAEIPKEA
ATS
NT seq
3972 nt
NT seq
+upstream
nt +downstream
nt
atgaatacgcagcccagacgcgttccccaaggggagagtcagtatcccagagttattgcc
ccttcagctcagcgctttgacattgcaggcagcacagcagctgaaaatctctcccagatt
cagtttcccatgcacaattttccgactacacagtcgcatgttcattcatccgggatgcat
caccagccaaacccaactttaccgggtcaccatggagccccagcagggcagggtggctcc
cagccccccatccagcaggcccatgcccagggacctccccctcaggcccactcagcagcg
tcccagggacagcagcagcagttccagaggttaaaggtcgaggacgcgctgtcctacctg
gaccaggtcaagctacagttcgggaaccagccacaggtctacaacgacttcctggacatc
atgaaggagttcaagtctcaaacaatcgacacccctggagtgattaatcgagtgtccaac
ctgttcaaaggacacccagacctgattgtgggcttcaacacgttcctgcccccgggctac
aagatcgaggtccaggccaatgagatcagcgtacaccagcccgggcagcagaccttgtgt
atccctaccaatgcccccgtaatgctgccctctgctacgccaatgccgggacacaagttg
gacatgttctccatgcagccgaagacgacacctccccctgcccacatggcgaccccgccc
actcacggctcctcccaccactcttatcaccagtccccccaccgcggggccgcggccgat
cagatagggggaactaccccccagagccaccagccccagcctcagcagccacaggctggt
caaccggtggagttcaaccacgccatcaactatgtcaacaagatcaagaatcggttccag
ggtcagccagagatctacaaggcgtttctggagatactgcacacctatcagaaggaacag
cgcaacctgaaggaggggattgtctcccctgcgtgtaagccactgacggaggcggaggtc
tactcccaagtggccaagctgttccagaaccaggaggacctactggccgagtttggacag
ttcctgcccgacgccaacggatcagcctatggcggatatctgaacatgttgcagggtgac
agttccctgggggtcaggaatgaccactcatccactgtcaaaaagccctccctgggcaac
aagagccagatgggcaagagcgggaaccagcacagacgcccctctggtgggccccaacca
ccccagaaggtgagcagagttaaagggtcacagatgagcggtcaaaaacagagaacagga
actttgaaagacatctcattggccgaggctgggcggtacggaactctgaacgagtttgcc
ttctttgacaaagtgaggaagttccttaagcacccagaggtatacgagaacttcctgcgt
tgtctggttctcttcaaccaggaagtcatttcccgtactgaactggttcagctggtccag
acattcttacagcggtcccccgagttgtacaagtggttcaaagatttcctggggtacaaa
gagtcaggaggcaccaccgaggcggtcccccagggggcgctcggcaaggagagggtcagc
ggggagctggccatggaaatagattatgctacctgcaagcgctatggagcgagttacaga
gcactgccaaagtcctacccccagcccaagtgttcaggccgcagtcccctgtgtagggag
gtactaaacgatacctgggtgtccttcccctcctggtcagaagactctacctttgtcaca
tcgcggaaaacacagtacgaggagcacatctaccgatgtgaagacgagcggttcgagctt
gacgttgtcatagaaacaaatctggccaccattcgttgcttggaggctgtgcagaagaaa
atgggccgcatgtcttcagaggaggctgccaagttccggctggacaacgccctagggggg
tcatccgacgtcctgcaaaggaaggccatacaaaggatatacggcgacaaagccccggac
attatcgacggactgaagaagaatccagtggtggcagtaccattagtactgaggaggtta
aaggccaaggaggaggagtggcgcgaggcccagcgggacttcaacaagtactggcgcgag
cagaacgagaagtactatctgaagtcactggaccaccagggcatcaacttcaaacagaac
gacataaaggccatccgatccaaggcactcctcaacgagatcgagaccatctacgacgag
aggtctgaacaggacacggagaccgcggaagccttcaaccctcacctaagttacgtgtac
aaggatcggtcagtcatagaggacgcctcctccctcatactgcaccacatgaagcgacag
gccgctatccacaaagacgacaaacacaagatcaagctgttactacggcaactgattcct
gacctgttcttttcacctcggcaggaaatgagcgacgatgaagatgaagatgacatggaa
acagatgaagcagttgacaaggaaacaacaaaatcagaagaaaagagagagtcggagagg
gacagatcgtcaagttcagggaaaaatgggaaggacagtgaagcaggcaccctgaaaatc
aaagaggagaagatggagacgacggaaatcaaacaggaagacgaggagagtaaatcggca
gactctgccatcattaacggcagccaggacgaaaacaccaacgatggggatatggaggat
gacgacatctactccctgttctttgtcaacaacaactggtacctgttcttccgcctgcac
cagatcctttgcgagcgcctgtacaagatctacacctactccgtcaaaatcgccgcggag
gaggcgcagtgccgcaaggacaggaaggagtcgaccgccatcgctctacgcctcaaagct
ccaagtgagatagagccggaggagtactacccgtacttcctggagatggtgaagagttta
ctggacggtaacctggagtccacgcagtacgaggaccagctgcgtgagatgtacggcatc
cacgcctacatcgccttcaccatggaaaaactcgtacagaacctggtcagacagatgcag
cacattgtgcaggacgaggtgtgtctgaggatcaccgcgctgcaccaggaggagaggaag
aacggggccaccggggggcgggttgccaccgtacaccagcggaccgtcaaggaaactgcc
taccacaagagggccgaacagagtctcagtgaggagaactgcttcagaatcgtcattttc
aagaaggagtgcaggttgacctttgaactgatggacactgagcatgagcagtcggacgac
ccgatagaggtggagcgctggtccgagtacgtggagaagtacgtctccaaggatgacacc
gtctccgacgacctgaaggaacacctcaaccgcaaacctgtcttcttacccaggaatgtc
cgacagtggcgacgtcaccagaagaaccaaaaatcccggtcggacacggagacagaggaa
atcctgggctctcccaaacaatcgacggaggagatggacatcctggataatacagaatgt
aaattcaacgtcaactcattcaaaatcgtctacgtggtcaacagcgaatactacctgtac
aagagaacagctctcaccaaagccagagagtcccacaagagagtctcactgaagctccat
gacaagttctcgtcgtggatcgagggctggcgtgaggagaacctgagcgaggaccagcgg
gccaactgtgaggactggctaatgggtcacggcgaggatgtggtggcatgtactaccacc
aaagagccacgtggcgaccaggactccacgccctacttctcctacaacaagtaccacgtc
gagtacgagtatgagacaaagagcgaggcaggggaaccagctgagatacccaaagaggcg
gccaccagttaa
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