Magallana gigas (Pacific oyster): 105335258
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Entry
105335258 CDS
T03920
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit B
KO
K15213
TATA box-binding protein-associated factor RNA polymerase I subunit B
Organism
crg
Magallana gigas (Pacific oyster)
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
crg03021
]
105335258
Transcription machinery [BR:
crg03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
105335258
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rrn7_cyclin_N
Rrn7_cyclin_C
Zn_ribbon_RRN7
DUF4132
FtrD-like
Motif
Other DBs
NCBI-GeneID:
105335258
NCBI-ProteinID:
XP_011437370
UniProt:
K1R0Q9
LinkDB
All DBs
Position
8:15430186..15438293
Genome browser
AA seq
719 aa
AA seq
DB search
MPVCETCEGEDYEEIDGFFYCTTCQTQSQAFRVEELEDDFNTQPSRSLRLKAKTVKTKST
RQLTDIEKEFGRPWHTYEAYQKVIKKQVKTLIAMGADPALKDVVFRIWCKYLSLTGIAFP
EDQAKQKTVFSGFQRNREVYPPTIENPVVPLVRSKKKRLQKFGLSVSKIRRLQEQQVMME
TLKGKEFYEGDNPLEELSINGDSESDEDFLGSEENCIVERKEVTIMVRTQWMSMFKTLCF
CLLGMRILKCLVTASDIVRWVKQGLLPYMQVSTTLPANMKFCFLDNNAFQTKVPRVDKMY
KTTQKLLDYLELRDVQIQVPTPVLISKFIVLLNLPAELHGFCQRLHMMRVEKIKEQEGIE
ICESNEVLAMMCIITTLQLMLGLNDRMEWELSKCAKQIMEIPGFEHRLFCWDQWVSYTTD
HKLSGTYSCVLTAQFDPRSVKDIDRYVEELKSLKKNVRKMNDNCRKRCENRLVREETISA
IKRPINLLLEKVKEKEKRHPKPGSGRESMAAELLEKDPMGYFMGEYDEKLMAESEPETIS
FKPCSLKYITQPRSFVQELENCGLDESTIYSSCLESSDEDDNKESDNEKCDENDEDFHQL
SSSRRRNKKEKKTRVREKLSRIVDLNQSGNEKFDKKKLLEISDIVLSVHKNFPLVDPMNA
STNQSASLQWLIQICAEVIQCSVEVLQSELVRFQISMFGEDDTLQTNRREFLQDVANQT
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgccagtctgtgaaacatgcgaaggcgaggactatgaagaaattgatggtttcttttat
tgcacaacgtgtcaaacacaatctcaggcttttcgtgtagaagagttggaggatgacttt
aatacccaaccgtcaaggtcattgcggctcaaagcaaaaacggtcaagacaaagtcaact
cggcaactgacagacatagagaaagagtttggtcgaccatggcacacatatgaagcttac
caaaaagttatcaaaaagcaagtgaaaactcttattgcaatgggagcagaccctgcttta
aaggatgtagttttcaggatctggtgtaaatatctctccctcactgggatagcattccca
gaggatcaagccaaacaaaaaactgtattctcaggattccaaagaaatagagaagtatac
ccacctaccatagagaatccagttgttcctttggtcaggtccaagaagaaacgtctacaa
aaatttggactgtcggtctccaagatcagaaggctgcaggagcaacaagtgatgatggaa
accctgaagggtaaagagttttacgagggagacaacccactggaggagttgtcaatcaat
ggagattcagagagcgatgaggacttcctggggtcagaggaaaactgtattgttgaaagg
aaagaagtgaccataatggtgaggacacaatggatgtctatgtttaaaactctgtgcttc
tgtcttcttggaatgaggatcctaaaatgcctagtcacagcttcagatattgtaaggtgg
gtgaaacaaggtctccttccctatatgcaggtgtcaacaacactgccagccaatatgaag
ttttgttttcttgacaacaatgcctttcaaacaaaagtgccacgtgtggataaaatgtac
aaaaccacacagaaactacttgattatcttgaactgagggatgtccaaattcaagtacca
acacctgttctgattagcaagtttattgttcttctaaatctgccagcggagttgcatggt
ttctgccagagattgcacatgatgagagtggagaaaatcaaagaacaagaggggatagag
atctgtgagagcaacgaagtcctggccatgatgtgcatcattacaacgctacagctgatg
ctgggcctgaacgatagaatggaatgggagctttccaaatgtgctaaacagataatggag
attcctggctttgagcaccgcctgttttgctgggaccagtgggtgtcctacaccaccgac
cataaactgagtggtacctactcctgtgtcctgaccgcacagtttgatcctagatcagtc
aaagatatagacagatatgtggaggaattgaaatccctgaagaaaaatgtcagaaagatg
aacgacaattgtagaaagagatgtgaaaatagactagtgagagaggaaaccatatctgct
attaaaagaccaattaatctacttttggagaaagtgaaagagaaggagaaaagacatccc
aagcctggcagtgggagggagtccatggcagctgaactgttagagaaggatccaatgggg
tatttcatgggggagtatgatgagaaattaatggctgaaagtgaaccagagaccatttca
tttaaaccatgcagcctgaagtacatcacacaacccaggtcgtttgtccaggagttggag
aactgtggattagatgagagcaccatctacagttcctgcttagaaagttcagatgaagat
gataataaagaaagtgacaatgaaaaatgtgacgaaaatgatgaggattttcaccagttg
tcaagtagcaggagaagaaacaagaaagagaagaagacgagagtgagagaaaaactgtcc
agaatagttgatttaaaccaatcgggaaatgaaaagtttgataagaaaaaactcttagag
atttcagatattgtcctaagtgtgcataagaactttccactggtcgatccaatgaatgcc
tctaccaaccagagcgcttctcttcagtggctgatacaaatttgtgcagaagtaattcag
tgttcagtggaagttttacagtcagagctggtgaggtttcagatctccatgtttggtgaa
gatgacacattacagacaaaccgcagagaatttttgcaagatgtcgcaaatcaaacatag
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