Magallana gigas (Pacific oyster): 105335270
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Entry
105335270 CDS
T03920
Name
(RefSeq) low-density lipoprotein receptor-related protein 6
KO
K03068
low density lipoprotein receptor-related protein 5/6
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg04150
mTOR signaling pathway
crg04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
105335270
04150 mTOR signaling pathway
105335270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
crg04131
]
105335270
Membrane trafficking [BR:
crg04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
105335270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FXa_inhibition
Ldl_recept_b
cEGF
Sushi
Adeno_E3_CR2
ECSCR
EphA2_TM
EGF
Motif
Other DBs
NCBI-GeneID:
105335270
NCBI-ProteinID:
XP_011437383
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Position
8:complement(15323142..15337247)
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AA seq
1284 aa
AA seq
DB search
MRAQIFLQLFWGLGIYFSEAGFPPQIPYLFWTVNTNQLFYLNNTENWIRQNEQPNIFRFS
YGDSKHKHLGCSYDLERNYLLFSDNSANTISLLGVKSNGGLQGAYVHIGTSSGVGHVAVD
WISSNVYWSDSLFGWIGLQALPKNIHNAAFNRKFKVVVDKFLDIPSGLAVHASKRFLFWT
DTGIQPKIERSLLDGSKRKVLVWSGILYPVSIAVDVHSNTIYFTDSARETVESCDLEGNA
RRILFYETNSVFYGIETFKNYVIVSDQTSNRILVLSNSTGQKMVTPLRTPSPPFSLGLFS
QDNQPIGSTDCDTFGCSQICIIESSGARCLCEDGYSLLADGKTCTVTDKTIQRSILFAAG
PQICHYPITVINSFKYMTISTPCDLIATTPGNVSYFAIAMHSNQVFYAKDDTIFSQNLFG
NVFVSNFSTRNKISGLDYDWVTNTVYWSEESVAKIFYWNVSSDRVANTGEITVPGLGIPK
ALKIDPFNMRVFYIDSSTTPSIKVIYLTNNRIETLENYDISNPIFLHFDRRKDTVFWSDN
GRSSLGSVRADGLYTKIKQLPEGSILTGIAVYKDYLLWLSNTHSNHSLNVQENTTLGSDT
IIKMPLGVVAPRVLDLRVFDRALQPSVREPCITDNDGCQHICIVEGESSQCACHVGYTLQ
SDRKSCLSAPVASNFLLTTDIQIKGIYQINLENKNISAVDVLAGNPNIPDYDNVRRKLVW
WDKSKNTIMESSLYGTDGKAVKGGVRNVGGLVIDHSTGNIFYASDNNIYVTTSSGNVYRK
LLSGVNIGSLQVDSKRGIMVWIEGRPNPKIIRSYMDGTNVETIISNSTHFISTPMDLAID
NSDGSLVWCDDTLDKIDIVSMITLTSRTVISNRGEYPVSVAVLGEFIYYIARDRRSITKI
SKIIGSKPDDVVSSPLFGKLLYLTIYEESKTLHKLCSNQNGMCSKFCLPRGENDRVCDCE
DGNIVNSEGLCPGDVQCPLVIDHGRIPTTCRRLTGDVCEFTCNEGYQLGVPETTMLLCGS
NGKWNQTSELCKVKKCQDSFENGNIASGCSLEVDTTCGYTCHDGYIKSGSVSLVCNKNGA
WNEEISQLCKLKDKGNTDTIIGGVAGSAAGLVLIIVIIVAVVCMRIRRKKKRDSENQPIN
VSYVCPSVSGSVLSTSQISTYTTLTDDRESVYSEIREEFDQPKTVEIPPIHDKNFKEMGV
DIQKGSSIRSERYSIFPGKNADEGGYLEACHVGNSNDFLPVPDYEHDDWLEPSPRNGYLD
AVRINDHYGNPKRKDDARFKHPYE
NT seq
3855 nt
NT seq
+upstream
nt +downstream
nt
atgcgagctcagatatttcttcaactgttttggggtttagggatttatttttcagaagcg
ggatttccaccccagattccatacctattctggacagtcaatacaaatcaattgttttac
ctgaataacactgaaaattggattcggcagaatgaacaaccaaacatatttcgcttttca
tacggagacagtaaacacaaacacttaggatgttcctatgatttggagagaaattatctg
ctcttcagtgataattcagcgaatacaatttcacttctgggggtaaaatccaacggagga
ctccaaggcgcttacgtacacatcgggacttcctctggggttggacacgtagccgtggat
tggataagctccaatgtgtattggtccgatagtttgtttggctggatcggactgcaagct
ctgccaaagaacattcataatgcagcatttaaccgaaagttcaaggtagtagttgacaag
ttcttagacatcccctcgggtcttgctgtgcacgccagtaaaagattcttgttttggacc
gataccggaatccaaccaaagatagaacgttctctgctagatggttctaaaagaaaggtc
ctcgtttggtccgggattctgtatccggtttccattgctgttgatgtccatagcaacaca
atttatttcaccgactcagcgcgcgaaactgtggagtcatgtgacctagaaggaaatgca
agacgaattctattctacgagacaaattctgtcttctatgggatcgaaactttcaagaac
tacgtgatagtctccgaccagacatcaaaccgtattctcgtcctgtcgaattcaactggt
cagaaaatggtgaccccattaaggactccttcccctccgttctcattgggcctgttttca
caggacaaccaaccgattggctccacggattgtgatacatttggatgtagccagatatgc
atcattgaatcctcgggggctaggtgtctgtgtgaggacgggtactctttgttggcagac
ggtaaaacgtgcactgttacagacaaaaccatacaacgaagcatacttttcgcggccgga
ccacaaatttgccattaccctataacagttataaatagctttaaatatatgactatctca
acaccatgtgaccttattgccactacccctggcaatgtttcgtactttgcgattgctatg
cactcaaatcaagtattctacgctaaagatgacaccattttcagtcagaatttgttcgga
aacgttttcgtctcaaacttttccactcgcaacaaaatttcaggtttggattacgactgg
gtgacaaatactgtgtattggagtgaagaatctgtggcaaagatcttctattggaacgtt
tcaagcgacagggttgccaatacaggagaaataacggtcccaggtttaggaattccaaag
gcactgaaaatcgatccattcaacatgagagtattttacattgattcctcaacgactcca
tctataaaagtaatttatttgacgaataacagaattgaaactctagagaactatgatata
tcaaacccaatattcctgcatttcgatcgacgaaaggacaccgtattttggagtgataat
ggcaggtcctctttgggatcggtaagagctgatggcctatatacaaaaattaaacaactt
ccggaaggatcaattctaactggaattgcagtatacaaggattacttactttggttatcc
aacacccattcgaaccattctcttaacgtacaggagaacacaactttgggctcagacacc
attataaaaatgccgcttggtgtagtggctccgagagtattagacttgcgtgtatttgat
agagccttgcaaccatctgtcagagaaccatgcatcactgacaacgatggatgtcaacat
atctgtatcgtagaaggggaatcaagtcagtgtgcttgtcacgtgggatacactcttcaa
tctgaccggaagtcgtgtttgtcggctcctgttgccagtaacttcttactgaccactgat
atccaaattaagggcatataccagataaaccttgaaaataaaaatatcagcgctgtagac
gtattggcgggaaaccctaacattccagattatgacaatgtcagaagaaaacttgtttgg
tgggataaatcaaaaaacaccattatggaaagttctctatatggaacagatggaaaagct
gtaaaaggtggtgtgaggaatgttgggggactagtgattgaccattcgacaggaaatata
ttttacgcatcggacaacaatatatatgttacaaccagttcaggcaatgtgtatcgtaaa
cttttgagcggagtcaatattggatctcttcaagtagactcaaaacgaggcatcatggta
tggattgaggggcgaccaaaccccaaaatcatacggtcttatatggatggcaccaacgtt
gaaactattatttccaattcaacccatttcatcagtacacctatggatttagccatagac
aactcagatggcagtcttgtatggtgtgatgataccttggataaaattgacatcgtaagc
atgatcactctgacgtcacgtacagtcattagcaacaggggagaataccctgtatctgtg
gcggttctcggggaattcatttattatatagctagagacagaagatcaatcacaaagatt
tctaaaataattggatccaagcctgatgacgtggtgtcctccccattatttggtaaactc
ttgtacctaaccatctatgaggaaagtaaaactttacataaactgtgttctaaccaaaac
ggaatgtgcagcaaattttgtttaccaagaggagaaaatgatagagtatgtgattgtgaa
gatggcaacattgtcaattcagaaggactttgccccggcgacgtacagtgcccgttagtt
atagaccacggaagaatcccaacaacttgcagacgactgaccggggacgtttgtgagttc
acgtgtaacgaaggttatcagctcggtgtaccggaaacaaccatgcttctgtgtggatcc
aatgggaagtggaaccaaacgagcgagctgtgtaaagttaaaaagtgtcaggactcgttt
gaaaatggtaacatagcgtctggttgcagccttgaggtggatactacatgtggatataca
tgtcacgatggatatattaagtcgggatcggtatccttagtctgcaataagaatggagct
tggaacgaagagattagccagttatgcaaactcaaagacaaaggcaacactgatacaatt
ataggaggagtggctggttcagcagcaggcctcgttttgattattgtcatcattgttgct
gtcgtctgcatgcggattagaagaaagaagaaaagggattcagagaaccaacccattaac
gtgtcttacgtttgcccaagcgtgagtggaagtgttctttccacctctcaaataagtacc
tacacaacacttaccgatgacagagaaagtgtctacagtgaaatcagagaagagtttgat
caacccaaaacggttgaaataccaccaatacatgataaaaattttaaggaaatgggagtg
gatattcagaaaggttcgtcaataagatctgaaagatattccatctttccaggaaaaaat
gcggacgaaggtggctaccttgaggcatgccatgtaggaaattctaatgattttctgcct
gtgcctgattatgagcatgatgattggttggaaccaagcccacgtaacggatatctggat
gcagtgaggataaatgatcactatggaaacccaaaacgcaaagatgatgcccgttttaaa
catccgtatgagtaa
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