Magallana gigas (Pacific oyster): 105335553
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Entry
105335553 CDS
T03920
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
105335553
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
crg03400
]
105335553
DNA repair and recombination proteins [BR:
crg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
105335553
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
AAA_27
Motif
Other DBs
NCBI-GeneID:
105335553
NCBI-ProteinID:
XP_011437807
UniProt:
K1Q4X8
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Position
3:complement(39320199..39324774)
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AA seq
915 aa
AA seq
DB search
MDAFQDQGFISAFKSLPEKPSTTVRFFDRTDYYTVHGQDAVFVAKEVFKTVAVIKYLGAG
EKKLESVTVSKLNFESLVKELLLIRQYRVEILKNKTGSKNNEWMLAFKASPGNLTQFEDI
LFGNSDISQSVGVLGLKIGTENNERMVGVGFADVMMRKMLVAEFADNDQFSNLEALIVQM
GAKECVVGTGDLHTGKLRQVLERSNILITERKKSDFSSKDVVQDLNRLLKCKKGQQVNSA
TLSEMEKKIAMEAVSALIKYLELLSNEDYFGQFSIGSFDFSQYMKLDSAAVQALNLFPTS
SDGNKNQSILGLMDRCKTVQGQRLLAQWIKQPLMDINLIEERQKLVEFFVKDTELRQLVA
EDHLRRLPDFQRLARKFQQRKATLQDCYRVYQALDKLPHLMETLEKHGMESCQLIMEIFV
NPAKEILMDFAKFQEMVEETMDLQQVENHEFLIKPGFDEELQALSEKISDLEDKIKGQLN
KVARDLGIEANKVLKLESNAQLGYFFRVTRKEEKALRNNKNYITIDTKNNGVRFHNNAVK
QLNEDYLKAKEEYSEQQKSIVAEIISIAAGYCETMVILNELIAQLDVLVSFAVSATSAPI
PFVRPSLLPKGSGNIKLIDARHPCLEMQEDISFIPNDIIFEKDKQMFHIITGPNMGGKST
YIRSAGVVVLLAQIGSYVPCSEAQVTIVDSILARVGAGDNQVKGISTFMAEMLETASILK
SATENSLMIIDELGRGTSTYDGFGLAWAISEHIATKIKGFCLFATHFHELTTLADKIPTV
NNLHVTALTSNDTLTLLYRVKQGPCDQSFGIHVAELAHFPAHVIEFSKKKAAELEDFQSV
DLETSLKGDDEPAVKKRKMEKEEGVEIIQNFLDSVKKLPISSMSDQDILSKMKEMKQQVL
DQNNAFVRDVLAKKN
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
atggatgcatttcaagaccaaggattcatctctgcctttaaaagtcttcctgagaaacca
agtacaactgtgagattttttgatcgtacagattattatacagtccatggacaagatgct
gtttttgttgccaaggaagttttcaagacagttgcagtgataaaatatcttggagcagga
gaaaagaagctggagtccgtaactgtaagcaaactcaactttgaatctctcgtcaaagag
ttgttgttaatacgtcaatatagagttgaaatattgaagaacaaaactggatccaaaaac
aatgaatggatgctagcttttaaagcatctccaggcaatctaactcagtttgaagatatt
ttgtttggtaactccgacatatcccaatctgttggcgtgttaggtttgaagatcggaaca
gaaaataatgagagaatggtgggggttggatttgctgatgtaatgatgagaaaaatgttg
gtagcagaatttgctgacaatgaccagttttcaaatttagaggcattgattgtacaaatg
ggagccaaagaatgtgtagttgggacaggtgatctacacactggaaaactgagacaagtc
ttggaaagaagtaatattctcatcactgaaagaaagaagagcgattttagcagcaaggat
gttgtgcaagatcttaaccgattgctgaagtgtaaaaagggacagcaagtaaacagtgca
actctaagtgaaatggagaaaaagatcgcaatggaagcagtttcggcacttatcaagtat
ttggagctcctgtcaaatgaagattattttggacaattcagcattgggtcttttgacttc
agtcagtatatgaaacttgattctgcagcagtccaagcattgaatctgttccccacctca
tctgatggaaacaagaatcaaagcattcttggattaatggacaggtgtaaaactgtgcag
ggacaaaggcttctggctcagtggataaagcaacctctgatggatattaatcttattgag
gaaagacagaagcttgtggaatttttcgtaaaagacacagaacttcgacagttggttgca
gaagatcatttacgaaggttaccagactttcaaagattggctcgaaaattccagcagaga
aaagcaacactgcaggattgttacagagtttatcaggcattggataagttaccccattta
atggagactctagaaaagcatgggatggagagttgtcaacttattatggagatattcgta
aatccagcaaaagaaattttgatggattttgccaaatttcaagaaatggtggaagaaacc
atggatctccaacaagtagaaaaccatgaatttctaataaaaccaggatttgatgaagaa
ttgcaagccctgtcagagaaaattagtgatttggaagataaaattaaaggtcagctgaac
aaagttgctagagatttaggaattgaagcaaacaaagttcttaaattagagagtaatgca
caactggggtatttcttcagggtgacacgaaaagaggaaaaagcattgagaaacaacaaa
aattatataactatagacactaaaaacaacggagttcgttttcacaacaatgctgttaaa
caactgaatgaagattatctgaaagctaaagaagaatacagtgaacagcagaaaagtatt
gtagctgaaatcatttccatagctgctggttattgtgaaaccatggtcattttgaatgag
ttgattgcgcaattggatgtgttggttagttttgctgtgtcagcaacaagtgctccaata
ccatttgttcgcccaagtctgttgcctaaaggcagcggaaatatcaagctgatagatgcc
cgtcacccttgcttggaaatgcaggaagatatttctttcattccaaatgacatcatcttt
gaaaaagacaaacagatgtttcacatcattactggaccaaacatgggaggtaaatctacc
tatattcgttcagcaggtgtcgtggtacttcttgcacagattggttcttatgttccatgc
agtgaggctcaggtgaccattgtggacagcattttggcgagggttggtgctggagacaat
caagtgaagggcatttcaactttcatggcagaaatgttggaaacggcttcaattctgaaa
tcagcgacagagaactctcttatgatcattgatgagctcggtagaggaacttcgacatat
gatggatttggactggcttgggcaatatctgaacatatcgcaacaaaaatcaaaggattc
tgcctctttgcaacccattttcatgaattaactacacttgccgataaaataccaacagtg
aataacttacatgtcacagctttaacctcaaatgacactttgaccctactctacagagtc
aagcaaggaccatgtgaccagagttttggaatccatgtcgcagaattagctcatttccca
gcacatgttattgagttttcgaagaaaaaggcagcagagctcgaagatttccagtcggtt
gatttggagacttcattgaaaggagatgatgaaccagctgtgaaaaaaaggaaaatggaa
aaagaagaaggtgtggagattatccagaatttcctagatagtgtgaaaaagttgccaatc
tccagcatgtcagatcaagacattctcagcaaaatgaaagaaatgaaacaacaggttctt
gatcaaaataatgcatttgttagagatgtgttggctaagaaaaattga
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