Magallana gigas (Pacific oyster): 105335600
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Entry
105335600 CDS
T03920
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit isoform X1
KO
K07466
replication factor A1
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg03030
DNA replication
crg03420
Nucleotide excision repair
crg03430
Mismatch repair
crg03440
Homologous recombination
crg03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
105335600
03420 Nucleotide excision repair
105335600
03430 Mismatch repair
105335600
03440 Homologous recombination
105335600
03460 Fanconi anemia pathway
105335600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
crg03000
]
105335600
03032 DNA replication proteins [BR:
crg03032
]
105335600
03400 DNA repair and recombination proteins [BR:
crg03400
]
105335600
Transcription factors [BR:
crg03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
105335600
DNA replication proteins [BR:
crg03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
105335600
DNA repair and recombination proteins [BR:
crg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
105335600
MMR (mismatch excision repair)
105335600
DSBR (double strand breaks repair)
HR (homologous recombination)
105335600
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
POT1
Motif
Other DBs
NCBI-GeneID:
105335600
NCBI-ProteinID:
XP_011437861
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All DBs
Position
3
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AA seq
640 aa
AA seq
DB search
MSNPTLSSGALEAIINGQNFDKPVLQVISSKKITAQGSSADRYRLLLSDGEVSYSHAMLA
TQLNSLMDGELDNLAVIQVDKYLCNTIQGDRRVMILLDLHVVQRGSEVGQRIGNPQQYKA
AATQGTTAEHRNPQQYKASASKGTTAENNSAQCPPQMPKQEGGGQSFIGTVSDKQVNNNI
KKENMNGNSKGGYSLKTNNSGGTPGGTSRVHKIDSLTPYQNRWKIRARVTQKSGIRTWSN
SRGEGKLFSVTLTDDSAEIRATGFNDAVDKFYELLEVNKVYFFSKATLKTANKQYTTVQN
DYEMTFNPDTIIEPCDDDSSLPTMNFNFVKINELESKAPTSLIDVIGVVKNCGDVTTIIG
KQSQKEITKRDLQIVDQSGMSVNLTLWGADAQQFDGSGHPVIAVKGAKVSDYGGRSLSAM
ASSQIIHNPDLREGHMLKGWFEHDGHNMDFHGYKNDGMGGGGGGSTNWKCFAEIKSENIG
ADKPEYFTTKATVLFLRKENCMYQACPTESCNKKVVDQGNGMYRCEKCAREFPNYKWRMI
LSANLGDYSDNQWVTCFQESAEAMLGIKADDLGALKDSNEQAFDQVFTEACFKSYIFKFR
AKVETYNDESRLKTVTMNASTIDFKEQSQRLIEEIKKLQM
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaccctactcttagttcgggagcgcttgaggctattatcaacggacaaaatttt
gataaaccagtacttcaagttattagctctaagaagataacggcccaggggtctagtgca
gacagataccgattgttgctctcagatggagaagtcagttattcacatgctatgttggcc
acacagctgaacagtttaatggatggagagttggacaacttggcagtgatacaggtggac
aagtacctgtgtaacacaatacagggagacaggcgtgtgatgatcctattggatttgcat
gtggtacagcgtgggtcagaagtgggacagaggatagggaatcctcagcagtacaaggct
gcagcaacacagggcaccactgccgaacacaggaatcctcagcagtacaaggcttcagca
tcaaagggcaccactgctgaaaacaattctgcacaatgtccaccacaaatgccaaaacag
gagggaggtggtcaaagctttattggcactgtatctgacaagcaggttaacaacaatatc
aagaaagaaaacatgaatggaaattcaaagggaggttactctttaaaaacaaataattcg
ggtggtactccaggcggaacatccagagtacataaaattgacagcctcactccttatcaa
aacaggtggaaaattagggctcgtgtcacacagaagagtggaattcgaacctggtcaaac
tcaagaggggagggcaaacttttcagtgtcaccctaacagatgattctgcagagattcga
gccactggattcaatgatgctgttgataaattttatgaattgctggaagtcaacaaggtg
tacttctttagtaaagccactctgaagacagcaaacaagcagtatacaacagttcagaat
gactatgaaatgacctttaacccagacaccattattgaaccatgtgatgatgatagcagt
ctacctaccatgaatttcaactttgtcaaaatcaatgagcttgaaagcaaggctccaacc
tcccttattgatgtgattggagtggttaagaactgtggggatgtgaccaccattatcggc
aaacagagtcagaaggagatcaccaagcgcgacctccagatagtggaccagtcagggatg
tcggtcaatcttacgctgtggggagccgatgctcaacagtttgatggttcaggtcacccg
gtcatcgctgtgaaaggcgcaaaggtctcagattatggaggacggtccctttctgccatg
gcctccagtcagatcatccacaaccccgacctgcgggagggacacatgctgaagggctgg
ttcgagcatgatggtcacaatatggacttccacggctacaagaatgacggaatgggaggt
ggtgggggaggttcaacaaactggaagtgctttgcagagatcaagtctgaaaacattggt
gcagataaaccagaatatttcactaccaaagctacagttctcttcttgcgcaaagaaaat
tgcatgtaccaggcatgtcctacagaatcctgtaataagaaggttgttgaccagggcaat
gggatgtacagatgtgagaaatgtgctagggagttccccaactacaagtggaggatgatt
ttatctgctaacctaggagactactcagacaaccagtgggtgacttgtttccaggagtct
gctgaggccatgctggggatcaaagctgatgatctcggtgctctcaaggactcaaatgag
caagcatttgatcaagtgttcacagaagcctgttttaaatcctatatttttaagttcaga
gcaaaagtggaaacttacaatgatgaaagcagattgaaaactgtcacaatgaatgcaagc
accatagactttaaagagcaatcgcaaaggttgatagaggagataaagaagttacaaatg
tga
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