Magallana gigas (Pacific oyster): 105335655
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Entry
105335655 CDS
T03920
Name
(RefSeq) eukaryotic initiation factor 4A-III
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg03013
Nucleocytoplasmic transport
crg03015
mRNA surveillance pathway
crg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105335655
09122 Translation
03013 Nucleocytoplasmic transport
105335655
03015 mRNA surveillance pathway
105335655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crg03019
]
105335655
03041 Spliceosome [BR:
crg03041
]
105335655
03009 Ribosome biogenesis [BR:
crg03009
]
105335655
03012 Translation factors [BR:
crg03012
]
105335655
Enzymes [BR:
crg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105335655
Messenger RNA biogenesis [BR:
crg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
105335655
mRNA cycle factors
Stress granule specific factors
105335655
Spliceosome [BR:
crg03041
]
Complex C
Other components
EJC/TREX
105335655
Ribosome biogenesis [BR:
crg03009
]
Eukaryotic type
90S particles
Helicases
105335655
Translation factors [BR:
crg03012
]
Eukaryotic type
Initiation factors
eIF-4
105335655
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
AAA_22
UvrD-helicase
TniB
Motif
Other DBs
NCBI-GeneID:
105335655
NCBI-ProteinID:
XP_011437948
UniProt:
A0A8W8HVD6
LinkDB
All DBs
Position
6
Genome browser
AA seq
398 aa
AA seq
DB search
MARRVLEEDLKNIEFETSEDVDVTPTFDHMGLREDLLRGIYAYGFEKPSAIQQRSIKPIV
KGRDVIAQAQSGTGKTATFSISILQCLDTQIRETQALVLSPTRELAVQIQKVILALGDYM
SVQCHACIGGTNIGDDIRKLDYGQHVVSGTPGRVFDMIRRRNLRTRAIKMLVLDEADEML
NKGFKEQIYDVYRYLPPATQVCLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQ
FFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMVQ
KEREAIMKEFRSGASRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGR
KGVAINFVKSDDIRILRDIEQYYATQIDEMPMNVADLI
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
atggcgagacgcgtgttggaagaagatttgaagaatatcgaattcgaaacaagtgaagat
gtcgatgttacccctacttttgaccacatgggcttacgggaagatcttcttagaggaata
tatgcatatggatttgaaaaaccatcagcaattcaacaaagatctatcaaaccaattgtg
aaaggaagagacgtcatagcccaggcccaatctggaacaggaaaaacagccaccttttcc
atctctatcctacagtgtctggacacacaaataagagaaacccaggcacttgtactctct
ccaactagggagttggcagttcaaattcagaaggttattcttgccctgggagattacatg
agtgtgcagtgtcatgcttgtattggaggtacaaatattggagatgacatcagaaagttg
gattatgggcagcatgttgtttctggaacacctggcagagtctttgatatgatcaggaga
agaaatctgagaacaagagccataaagatgctggttttggatgaagctgatgaaatgtta
aataaaggtttcaaagagcagatttatgatgtgtacagataccttcccccagcaacacaa
gtttgcctaatttctgctacactcccacacgaaatccttgagatgaccaacaaattcatg
acagaccccattagaatcctggtgaaacgtgacgagttgacattggaaggcatcaaacag
ttctttgtggctgttgagagagaagagtggaagtttgataccctttgtgatctctatgat
actctgaccatcacacaagctgtcatattctgcaacacaaagagaaaggttgattggttg
acagagaagatgagggaggctaactttacagtgtcatccatgcacggtgacatggttcag
aaagaaagggaggccatcatgaaagaattcagatcaggggccagccgtgtattaattact
actgatgtgtgggctagaggtattgatgttcaacaggtgtcccttgtcatcaactatgat
ctaccaaacaacagagaattgtacattcacagaattgggcgttcgggcagatttggacgt
aagggtgtagctatcaattttgtgaagagcgacgacatcagaatcctgagagatattgaa
cagtactatgccacccagattgatgaaatgccaatgaatgtggcagacttgatctaa
DBGET
integrated database retrieval system
