Magallana gigas (Pacific oyster): 105336236
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Entry
105336236 CDS
T03920
Name
(RefSeq) Fanconi anemia group J protein homolog isoform X1
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg03440
Homologous recombination
crg03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
105336236
03460 Fanconi anemia pathway
105336236
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
crg03400
]
105336236
Enzymes [BR:
crg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
105336236
DNA repair and recombination proteins [BR:
crg03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
105336236
FA (Fanconi anemia) pathway
Downstream FA components
105336236
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
ResIII
HBB
Motif
Other DBs
NCBI-GeneID:
105336236
NCBI-ProteinID:
XP_065934696
LinkDB
All DBs
Position
3:complement(14723465..14748605)
Genome browser
AA seq
1422 aa
AA seq
DB search
MATEKKQMIHGVEVVFPCKPYPSQFSMMEKVIKGIERKENCLLESPTGSGKSLALLCSAL
AWQTAEYNKREKELSESSEKADSKKNCTCMCSEDSKETASKAAEKKAISSVLNAVSASPS
AFDDDDDDFKQPGSFRTPGNTKQNARPYVSISYETSPPECEQSTNSGSPDTSKPCTCGAD
SAPKARKVPKIYFGTRTHKQIAQIIRELKKTAYREVKMTILAAREHTCIHPAVSQMKGKN
EGCKELLDGPGCKFNDRLKRMPATQDYVKKQGLTEAWDIEDFVGLSKNIKVCPYFATRGL
RSGADIVFCPYNYLIDPVIRKSMEISLKDQVVILDEAHNMEDTSRDSAGEKIGDDALEKA
VNELDEMIKYEILTAEHLRVRQLCAGLLSLIRDNQDNLQNMDFDHEYKCWSSYDIVVRLE
KIGAGPKHFQDMQQHLKAVFEEALDKETVVKDMSGRVVKISSATLQTLEHIVKVLTYLYK
DDLKYVTDYRMAVVKATVYTRNPNTDDMWLNSKRRRGGQSMIPTTQLTLNFWCMNPGVAF
SDLSVCRSVVLTSGTLSPINSFESELGVPFPIKLEANHVIEDKQVWVGTVGQGPRGGTLE
AVYRSVETLQFQDELGDLVLRVCQHVPHGVLCFVPSYSTLSKLRNRWEITGLWERIKEHK
EVMVEPRSSERVDFEDIMRQFYDSVNMLQDQTEGKKTGALFVAVFRGKVSEGMDFADNYA
RAVITVGIPYPNSKDVQVKYKQEYNNMYRLSRGLLSGSEWYDIQAFRALNQALGRCIRHR
KDWGAIILVDNRFVRNQNKVQGLSKWVRRKVHTYQTFDSAITSIDKFTKDRQEDMPVVNP
DTSFIPGTPVTPGQHLGSQMTSPITSTPYGGGSETPLGKGFLSDTPLKSIVKSPNTLLGS
PEPSPQRTDNCVLMSPTEVHKNQNYQDLVQNRQVVQPHVTQNNQMSLPNTQPLDHMSQIM
KVINSSCAPKDKPYYIIIGQGTPQQQMYLIEPPTKPTVKSSGKVVVPQLNVGKGQTPNKT
GGQVCGKVTGQTCSTLVGPGEGKAKGQIQQQIHFGQTPMKSLLQTSAASVTKPSKTVSTG
PQKLQQDLSSSTANAECVIDLTENSKLPEGDSENKKTSGQSGPVSQACQGDVAAVQNETS
SAEKPNRFFKFCSINDPRNPEPILKSETKSAEPVTPVLFGGNSQDEDVVKLDPTPKNTSR
KPLFRKMEKNMDMSNEAVHSDDSEREFKNSSHVSKTAVAEEEVAGKEEDCTLRTRRGPRG
VKRTSASKSNLRLSKRKKGVEFLDEEEDSKENQTQKQAQLTCKKCGHSLISPLGEHEKRK
RVPKFLETAEVFKNKAVIFVSDKGDEISFQPYTAENGGLTMNSIWSEKEGCCVQFITCKG
CHKRGKQDQLIGAEIVCVENPSQEFQKGQVWLISATVSINDC
NT seq
4269 nt
NT seq
+upstream
nt +downstream
nt
atggccacagaaaagaagcaaatgatccatggggtggaggtagtgttcccgtgtaagccg
tacccttcacagttcagtatgatggaaaaggtgattaaaggaatagagagaaaagaaaac
tgcttactggaaagccctacaggcagtggcaaaagtttggctctattatgctctgctcta
gcatggcagactgcagaatacaacaaaagggaaaaagaactctcagaatcgagtgaaaaa
gcagacagtaaaaagaattgtacatgtatgtgtagtgaagatagcaaggaaactgccagc
aaagctgctgaaaagaaagcaatatcaagtgtcttgaatgctgtctctgccagtccttca
gcgtttgatgatgatgatgacgacttcaaacagccagggagctttagaacacctggaaac
acaaaacagaatgctaggccttacgtgtctatttcctatgagacttccccaccggaatgt
gagcagtccaccaatagtggctccccagacactagcaaaccttgtacgtgtggagcagac
tcagcacccaaggcacggaaggtccccaagatttactttggaaccagaacacacaaacag
attgcccagatcatccgtgagctgaagaaaacggcctacagggaagtcaaaatgacaatt
ctagctgccagggaacatacctgtatccatcctgctgtcagtcagatgaagggcaagaat
gaaggatgtaaggagttacttgacgggccaggctgcaagttcaatgatcgcctgaagagg
atgcctgccacacaggactacgtgaagaagcaaggactgactgaggcctgggacatcgag
gactttgtgggactctccaagaacatcaaggtttgtccgtactttgccaccagggggttg
aggagtggagcagacattgtattctgtccatacaactacctcatagacccagtcatcagg
aaatcaatggagattagtctcaaagaccaggtggtgatcctggacgaagctcacaacatg
gaggacacatctcgcgactcagcaggcgagaaaatcggggatgatgccttggagaaagcc
gttaatgaactggacgagatgattaagtacgagatcctaacagcagaacatctaagagtc
aggcagttgtgtgcgggactcctaagtttgatcagggacaaccaggacaatctacagaac
atggactttgaccacgagtacaagtgctggtccagctacgacattgtggtcagactagag
aagatcggggctggtcccaaacactttcaggacatgcagcaacacttgaaggcggtgttt
gaggaagccctggataaagaaaccgtcgtcaaagatatgtcgggtcgcgtggtcaagatc
agcagcgccaccttacaaactctggagcacatcgttaaggtgttgacttacctgtacaag
gacgatctgaagtatgtcacagattacagaatggccgttgtcaaggcaaccgtttacaca
aggaatccaaacactgatgatatgtggttgaattcgaaaagaagaagaggaggtcaatcc
atgattccaacaactcagctaaccttgaacttttggtgcatgaacccaggagtggctttc
tctgacctgtcggtctgtagaagtgtggttctgaccagtggtaccctgtcacccatcaac
tccttcgagtcggagctgggcgtgcccttccccatcaaactggaggccaaccatgtgatt
gaggacaaacaggtgtgggtggggactgtcggtcaggggccccggggagggactctagag
gctgtgtaccggtccgtggagaccctacagttccaggacgagttgggggatctggtcctc
agagtatgccagcatgttccccatggagtgctatgctttgttccctcctacagtacccta
agtaaactgagaaatcgctgggagatcacaggtttatgggagcggatcaaagaacataag
gaggtgatggtggaaccccgctcctcagagagagtggactttgaggacatcatgaggcag
ttctatgactcggtcaacatgttacaggatcagacggagggtaagaagacaggagccctg
tttgtggccgtgttccgggggaaagtcagtgaggggatggacttcgcagacaactacgcc
agggctgtcatcactgttggaataccctaccccaactcaaaggatgttcaggtgaagtat
aagcaggagtacaacaacatgtaccggttatcccgcggactcttgtcagggtccgagtgg
tacgatatccaggcttttcgggcactgaaccaggccctgggacgctgcatccgacacagg
aaagactggggagccatcatccttgtggacaacagatttgtccggaatcagaataaagtt
caaggtttgtcaaagtgggtgaggagaaaagttcatacataccagacctttgattctgcc
atcacttccatagataagttcacaaaggacagacaagaagacatgcctgttgtcaaccct
gacacctccttcatccctgggacccctgtcactcctggtcaacatctggggtcacaaatg
acctcgcctatcacctccaccccctatggaggagggtcagagacacccctagggaagggc
ttcctgtcagacactccactgaaatctattgtgaagtctcctaacactttgttagggtcc
ccggaaccaagcccacaaagaacagataactgtgtgctgatgtcccctactgaggttcac
aaaaaccagaattaccaggacctggttcaaaacagacaagtggttcaaccacatgtgacc
cagaataaccagatgagccttcctaatacacaaccccttgaccacatgtcacagataatg
aaggtcattaactcgtcctgtgctcccaaagacaaaccttattacatcattattggacaa
gggacaccccagcaacagatgtatctgattgaaccccctacaaaaccaacagttaagtct
agtggtaaagttgttgtacctcagctcaacgtaggtaagggtcagactccaaacaagacc
ggaggtcaagtgtgtggaaaggtcacaggtcaaacatgcagtacattggtaggtccaggt
gaaggaaaagctaagggtcaaattcaacaacagattcattttggtcaaacccctatgaag
agtttacttcaaacaagtgcagcatcagttacaaaaccatcaaaaactgtctctacagga
cctcaaaagctgcagcaagatttatccagttcaacagctaatgctgagtgtgttatagat
cttactgaaaattctaagctgccagaaggggacagtgagaacaagaaaacatcaggtcag
agtgggccagtttcacaagcttgtcaaggagatgttgcagcagttcagaatgagacgagt
tctgcagagaaaccaaaccggtttttcaaattttgtagcataaatgatcctaggaaccca
gaaccaattcttaaaagtgagactaaatcagcagaaccagtcactcctgtgctgtttggt
ggaaactcccaggatgaagatgtggtaaaattggacccaacacccaaaaatacaagtagg
aaaccactgtttcgaaagatggagaagaacatggacatgtctaatgaagcagtgcatagt
gacgatagcgagagagaatttaaaaattctagtcatgttagtaaaacggctgtggcagaa
gaggaagtagcaggaaaagaagaggactgtactttgaggacaagaaggggtcctcgagga
gtgaaaaggacatcagcctcgaaatccaatctgaggttgtccaaacgtaagaaaggggta
gagtttttggatgaggaagaggacagcaaggaaaatcagactcaaaaacaagcgcaactt
acctgtaaaaaatgtggccacagtctcatcagtccgctaggggagcacgagaaaaggaaa
agagttcctaagtttctggagacagctgaggtctttaagaacaaggcagtcatctttgtg
tctgacaaaggagatgaaataagtttccagccctatacagcagaaaatggcggtcttacg
atgaacagtatatggagtgaaaaggagggatgctgtgtccaatttatcacgtgtaaaggg
tgtcacaaacgtggcaagcaagatcagttgattggagcagagatcgtatgtgtggagaat
ccttcacaagaatttcagaaaggacaggtttggctaatttcagctactgtttctataaat
gattgttaa
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integrated database retrieval system
