Magallana gigas (Pacific oyster): 105337236 Help Entry 105337236         CDS       T03920                                  Name (RefSeq) pre-mRNA-splicing factor SYF1   KO K12867   pre-mRNA-splicing factor SYF1 Organism crg  Magallana gigas (Pacific oyster) Pathway crg03040   Spliceosome Brite KEGG Orthology (KO) [BR:crg00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     105337236  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:crg03019]     105337236    03041 Spliceosome [BR:crg03041]     105337236 Messenger RNA biogenesis [BR:crg03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     Other transport factors      105337236 Spliceosome [BR:crg03041]  Complex B   Other components    Prp19-related factors     105337236  Complex C     105337236 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  HAT_Syf1_CNRKL1_C HAT_Syf1_M HAT_Syf1_CNRKL1_N HAT_PRP39_N HAT_PRP39_C TPR_14 Suf TPR_2 Mad3_BUB1_I TPR_15 ARM_TT21_C ARM_TT21 RPN7 PPR NRDE-2 Motif Other DBs NCBI-GeneID:  105337236 NCBI-ProteinID:  XP_011440174 LinkDB All DBs Position 2:19707927..19717369 Genome browser AA seq 854 aa AA seqDB search MTIEMPESGETADKKPNDLFFEEDDLPFEEEILRNPYSVKSWLRYLEYKKEAPRSTVNLI YERALKELPGSYKLWYNYLKLRRRQVKGRCLNDPAIEDVINAHERALVFMHKMPRIWIDY CQFLVDYSRITKTRRTFDRALRALPITQHHRIWPRYLKFVRLYDLPETAIRVYRRHLKLQ KENTEEYIDYLMKIGWLDEAANKLVDIINDDSFVSRAGKSKHQLWNELCDLVAKNPDKVT SLKIEPIIRQGLKRYTDQIGVLWNSMADYYIRGGHFERARDIYEEAIMTVITVRDFTQVF DAYAQFEKNLISSKMESMEETGASEEDDLELELRLARLENLMERRPLLLNSVLLRQNPHN VHEWHKRVKLFEGKPREIINTYTEAVQTVDPKLASGKPNTLWVEFAKFYEKAGQIEDARI IFDKAVRVPYKHVDDLASVWCEWAEMEIRHENNEEALKLMQRATTPPSRKVSYHDENETV QSRVHKSLKVWSLYADLEESFGTFKTCKSVYDKIIDLRIATPQIVMNYGLFLEENNYFEE AFKAYEKGIALFKWPNVYDIWNTYLTKFMERYGGSKLERSRDLFEQCLENCPAKFAKSFY LLYAKLEEEHGLARHAMAVYDRATKAVLPEEQNEMFNVYIKRAAEIYGVTYTRPIYEKAI EVLHDEQARSMCLRFADLERKLGEIDRARAIYAHASQIADPRVAANFWQVWKEFEIKHGN EDTVREMLRIKRSVQAIYNTQVNFMSAQMLAASSGKGDNAGESSDNMQKLEERARQLAEE SVKDQAKPDKGILFVRSDNTQKELGELAKTANPDAIDIDDDFSSDEEAQVEEMEVKSVPT EVFGSLKNEEEEED NT seq 2565 nt NT seq  +upstreamnt  +downstreamnt atgactatcgagatgcccgaatcaggagaaactgcagataaaaaaccaaatgatttattt tttgaagaagatgacttgccatttgaagaagaaattcttcgtaacccatactctgtgaag tcatggttgagatatttggaatataagaaagaagcacccaggagcacagttaatttgata tatgagagggctctgaaagagcttcctggaagctataaactatggtacaattacttaaaa ctacgaagaagacaagtcaaggggcgttgcctaaatgatcctgccatagaagatgttata aatgcccatgagagagcacttgttttcatgcacaagatgcctagaatttggattgactac tgtcagtttttggtagactacagtagaataacaaaaacaagacgtacctttgatagagct ctcagggctctcccaatcacccagcatcacaggatctggcccagataccttaagtttgta cgattgtatgacttaccagaaacagctattagagtgtacaggaggcatttaaagctacag aaggagaatacagaagagtacatagattacttgatgaagattggatggctagatgaagca gccaacaaactggtggatatcatcaacgatgattcctttgtgtcaagagccggcaagtcc aaacaccagctgtggaatgagctgtgtgatcttgttgctaagaacccagacaaggtaaca tcactgaagatagaacctatcattcggcaaggactgaagagatacacagatcagattggt gtcttgtggaactctatggctgattattacattagaggaggtcattttgaaagagctcgt gacatttatgaggaagccattatgactgtgatcactgtgagggatttcacccaggtgttt gatgcttatgctcagtttgagaagaacttgatcagttctaagatggagagtatggaagaa acaggtgcttcagaagaagatgacttagaattggagctgagattagcaaggttagagaat ctgatggaaagaagaccacttctgttgaacagtgttcttctgaggcaaaacccccacaat gttcatgaatggcacaaaagagtcaaactgtttgagggaaaaccaagggagataatcaac acttacactgaagctgttcagactgttgaccccaaacttgcatcaggaaaacccaatact ttgtgggtggaatttgccaaattctatgagaaagccggacagatagaagatgccagaatt atatttgacaaagcagtgagagtgccctacaagcatgtggatgacttagcttctgtgtgg tgtgagtgggcggagatggaaatacgacatgaaaataatgaagaagctctgaagttaatg caaagagctaccacgccaccatcaagaaaagtatcctaccatgatgagaatgaaactgtt cagagtagagttcataaatcactgaaggtgtggtcgctgtatgcagatctggaagagagc tttggaacttttaagacgtgcaagtcagtttatgataaaatcatcgacctgcgaattgcc actccccagattgttatgaattatggtctgttccttgaagaaaacaattattttgaggag gccttcaaggcatatgagaagggaatagcattgttcaagtggccgaatgtatatgacata tggaatacctaccttacaaagtttatggaacgatatggtggctcaaagttggagagatct cgagatttgtttgaacagtgcttggagaattgtccagccaagtttgctaagagtttctac ctgttgtatgccaagcttgaggaggagcatggcctggccagacatgctatggctgtatac gaccgagcaacgaaagctgtgttacctgaggaacaaaatgagatgtttaatgtgtacatc aagagagctgcggagatttatggtgtcacctacacaagacctatctatgagaaagccatt gaagtgttacatgatgaacaggcccggtcaatgtgtttgcggtttgctgatttggaaaga aaacttggagaaattgatcgagctcgagccatctatgctcatgcctcgcagattgctgat cctagggtggcagccaatttctggcaagtttggaaagagtttgagatcaagcatggaaac gaggacactgtgagagaaatgctgcgaattaaacgctcagtacaagccatctataacaca caggtcaactttatgtctgcacagatgttagcagcttcaagtggaaaaggagataatgca ggagagagtagtgacaatatgcagaaactggaggagagagcaagacagttggccgaggaa tctgtcaaagaccaggccaaacccgacaaaggcattctgtttgtcaggagtgacaataca caaaaagaactgggagagctggcaaaaactgccaaccctgatgctattgacattgatgat gatttctctagtgatgaggaggcacaggtggaagaaatggaagtgaagtctgttccaact gaagtttttgggtctttaaagaatgaggaggaagaggaggattga

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