Magallana gigas (Pacific oyster): 105337397
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Entry
105337397 CDS
T03920
Name
(RefSeq) probable helicase with zinc finger domain isoform X1
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
crg
Magallana gigas (Pacific oyster)
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crg03019
]
105337397
Messenger RNA biogenesis [BR:
crg03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
105337397
3'-5' decay
Other 3'-5' decay factors
105337397
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
AAA_30
ResIII
AAA_19
zf-C2H2_jaz
PAM2
zf-CCCH
PhoH
UvrD-helicase
Bac_DnaA
TPR_19
AAA_16
AAA_22
zf-C2H2_4
zf-CCCH_4
AAA_7
zf-C2H2
Dehyd-heme_bind
MOV-10_Ig-like
Motif
Other DBs
NCBI-GeneID:
105337397
NCBI-ProteinID:
XP_034313019
LinkDB
All DBs
Position
7:complement(18997333..19027636)
Genome browser
AA seq
1712 aa
AA seq
DB search
MDRDNLSETERHGQPPSIDHVLTLINSLVKEKNFQDALEHTNTALAKYKHNEKLQEKKIK
ILCHQGKFEEAFDLTKNWKEREPKNAVANKEFKKLKKLIQVLRNLDSEEENEEEEEEEEA
VENNASVPASTASPTHTTPSEPTPTPPHAAEPHPTTSKSEIEGACALHDEKDDEDFSCTF
CDIKFVSASELETHCRSDLHKKRITSDEDQNWKYRVPPRNLTSEEFTICRSVLDAELNRY
EETRKCTFGDKCTQAHSKEELQEWKERFKFRTQQIKRARDKHLHGNTYAEQLMEKLVNAE
NSKSVMIQNVEYAKVHVNSELKVNMTTKKCTNAWTFTITSKRSLHRVTLLDDTNRTYFYI
ASISVGPKKTQKYQNLETHCQEWVNPDYTTRHSGEYVYRVKVVFKTDIYGTFRQTLVYDF
GLEPVLSREMQIESAPITDIEKLSKDLVLSEQGRWKVESVDLVPFENKPVPETEEEKQLL
SKYCLPEADKFRLSEHLMHPPTKETYRIWMHEMLYIEEWAQMDHISRYNIKTSLQLVNRF
LLVPGALSGAKYAQGGELFARMKLDDELSEDSAGGRLILMSSNVAWLAPFNPDDKMNSRQ
NKKVYQVLLEDKGKNFIFLRLPEKCVSELNLTCDQEFHAEIQFQLNRVSMCEMHSAIDQL
PTLDLVFPPPQRIPSSPWYPEDMDFSETVNERLNEKQKAAIRGITAAGDKCLPPLLLVGP
WGTGKTYTLAQAAKHALEVEENRILICTHSNSAADLYIKDFIHPIVKEGHMEAVPLRIYY
RHRWVQTVPEVVLQYCLLEMSASQGNFRMPSREEVDKHRIIITTLKTARYLCDLDLPQGY
FSHIFVDEAAQALESETLIPLSLAGRTTKIILAGDHMQLNPEVYSDFAKQQGFQKSLLDR
LYELYPDDCPCKIMLCENYRSHEAIIDFTSDLFYDSKLIPSGNQPAHPSYYPLTFFSTRG
EDLQHENSTGFYNIAEVHEVVDRVDDLQKNWPPEWGEVEGNIGVVAPYSDQVFRIRGELR
KRKMQYVSVERVFNVQGKQFRAIILSTVRTRHTCSSDASQEDVYDYGFLSNVKLLNTALT
RAQSIVVVVGDPLSLCLVGKCRKVWEYFLETCNEHKSFFGLKFSVLKAQLNSAELRKTYV
LNPLAPEFVPNRLYHVTSQTNVGAGASGGPNAANPGYFLGQKMMYPGGPYSQQMYVPLPY
QGYYPPVMYRPYVSPFIGGGGVGGRGRVPARVIYPRQLPVNGSSTKSSSPAKSSGSDTER
VASPDITRNTESPQGQGSVKKGQSSRSRAMVYVPRIPAPYPAMYYPYQPYPGYYYLPEDP
RLAQTHARYPYIAPGIPPQVYPHPYPAGPYIGTPIRPPQGGSPENTPSPGERSPNSQRSH
SLSPGPQRPPRSQSPAMSPNSAAAVAAAAAAAAAAGAGPHFQLLPNVKHIPAHLYTKAGS
SAGNSRSSTPLGGRDSPATERAGEEVRASFEHDYLKSVSPKLDLQERRASAQSPLARVIS
QRQGYIRDELEAMTLPGGQRTHYQNIVTTTRSSSGSMQNGSRVMEKGRSNKKPSKLELHS
TTGFSRQFSEDITTPTEITNLVKMIDDNDDVDMETRQLTHQSYAAQKNTSGRLYLNIPSQ
QELAMGESASSSPPSGSPPLGDQKPTYAGVLRRRLPSAQGDMDLSLLEPQTPHTPLGFTT
PGTEIDTDPLGILRNLNINSSAENQRTYKYFS
NT seq
5139 nt
NT seq
+upstream
nt +downstream
nt
atggatagagataacctgtcagaaacagaaaggcatggccagccaccgagcatagaccac
gtactgaccctcatcaacagcttagtcaaagagaaaaattttcaagacgctttagaacac
accaacactgccttagctaaatataaacataatgagaaattacaagagaagaagatcaaa
atcctgtgtcaccaagggaagtttgaggaagcatttgatctcactaaaaactggaaggag
cgagagccaaagaatgctgtggccaacaaagaattcaaaaaattaaagaaactcattcaa
gttttaaggaatttggattcagaagaagagaatgaggaggaggaggaggaggaagaggca
gtagagaacaatgcttctgttccagcaagtaccgcatcacccacacacaccacaccatca
gaacccacccccaccccaccccatgcagcagaaccccaccccaccacatcgaagtcagag
atagagggagcatgtgcactacacgacgaaaaggatgacgaggattttagctgtactttc
tgcgacattaaatttgtgtcagccagcgagttagaaacccactgtcgcagtgacctgcat
aagaaacgaatcacatcagatgaggatcaaaactggaaatatcgagtgccacccagaaac
ttaaccagcgaggagtttaccatttgtcgcagtgttctagacgcggagttgaatcgttat
gaagaaaccagaaaatgtactttcggggacaagtgtacccaggcccactccaaggaagag
ctgcaggagtggaaggaacgcttcaagttccggacacaacaaatcaaacgggcccgggac
aaacatctccatggcaacacgtacgctgaacaactgatggagaaactggtcaatgctgag
aactccaagtctgtgatgatacaaaacgttgagtatgctaaagtccacgtcaactcagag
ttaaaagtgaacatgacaaccaagaaatgcactaatgcctggaccttcaccatcaccagc
aagagaagtctgcaccgagtgaccttgctggacgacacaaatcgcacttacttctacatc
gccagcatttctgtgggaccaaaaaagacccaaaagtaccagaatctggagacccactgt
caggagtgggtcaacccggactacaccaccagacacagtggggaatacgtctacagggtc
aaggttgttttcaaaaccgatatttacgggacatttagacagactctggtttatgacttt
ggcttggaacccgttctgagccgagagatgcagatagagtccgcccccatcacagacatt
gagaaacttagcaaggaccttgtgctcagtgaacaggggcgctggaaagtagagagtgtg
gacttagtcccctttgaaaacaagccagtacctgagacagaggaagagaagcagttgtta
tccaaatactgtttacctgaggcggataagttccgtttatccgagcatctgatgcatcca
cccactaaggagacttatcggatctggatgcatgaaatgctctacatagaggagtgggca
cagatggatcatatttctagatacaacattaagacctctctacagctggttaaccggttc
ctactggtccccggggcccttagtggtgccaagtacgcccagggtggggaactgttcgcc
cggatgaagctagacgatgaactgtcggaggactcggctgggggccgcctcattctgatg
agttccaacgtagcgtggctggccccattcaaccctgacgataaaatgaactccaggcag
aataaaaaggtataccaagtgttactggaagacaaaggaaagaacttcatctttctccga
ctgccagagaagtgtgtgtcagagctgaatctaacatgcgaccaagagtttcatgctgag
atccagttccagctgaaccgagtctccatgtgtgagatgcactcggccattgaccaactg
cccaccctggacctggtatttcccccaccccagaggattccctcctcaccctggtacccc
gaggacatggattttagcgagacagttaatgaacgattgaatgagaagcaaaaggcagcc
atccggggcattacggcagcaggagacaagtgcctcccccctctactgctggtgggtccc
tggggtacgggcaagacgtacaccctggcacaggcagcaaaacacgcactggaggtagag
gagaaccgcatcctcatctgtacacactccaacagtgctgcagatttatacattaaagat
tttattcaccctattgtgaaagagggccacatggaggcggtaccactgcgtatctactac
cgccaccggtgggtgcaaaccgtccccgaagtggttctgcaatactgtctcctagaaatg
tctgcctcccaggggaacttcaggatgccttccagggaggaggtggacaaacatcgcatc
atcatcaccacgctcaaaactgcccgatatctgtgtgaccttgaccttcctcaaggatat
tttagtcatatatttgtggatgaagcagcacaagctttggagagtgagaccctgattcct
ctatctctggccggccggaccaccaaaatcatcctggcaggggaccacatgcagttgaac
ccagaggtatactcggactttgccaagcagcagggcttccagaagtctctgttggaccga
ctgtacgagctgtaccctgacgactgtccctgtaagatcatgctgtgtgagaactaccgc
tctcacgaggccatcatcgacttcacctccgatctcttctacgacagtaaactgattccc
agtgggaaccagccagcacatcctagctattaccctctgacttttttctcgacgcgaggc
gaggacttgcagcacgagaacagcacaggattctataatattgctgaggtacatgaagta
gtggatcgagtggatgacctacagaagaactggccaccagaatggggggaggtggagggt
aatattggagttgtggccccttattctgaccaggtgtttaggattcgtggcgagctcagg
aaaagaaaaatgcagtatgtcagtgtagagagagtttttaatgttcaaggtaaacagttt
cgtgccatcatcctgagcacggtcaggaccagacacacctgtagctccgacgcatcccag
gaggatgtctatgactacggcttcctgtccaacgtcaaactgctaaacacagcgctcacc
agagcccagtctattgttgttgttgtaggggaccccctgtctctttgtctcgtaggcaag
tgcagaaaagtatgggaatatttcctggaaacgtgtaatgagcataaaagtttctttggc
ctgaagttcagtgttctgaaggcccagttaaacagtgctgagctgagaaagacttatgtc
ctcaatcccttagccccagagtttgttcccaaccgcctgtaccatgtgaccagtcaaacc
aatgtaggagctggggcctcaggtggtccaaacgcagccaaccctgggtactttttggga
caaaaaatgatgtaccctggaggaccatattctcaacagatgtatgttcctctgccctac
caaggctactatcccccagttatgtacagaccttatgtgtccccgttcattggtggggga
ggagttggaggaagaggaagagtaccagctagagttatctaccccagacaattgcctgtc
aatggctcctcaacaaaatcctcatctcctgctaaatcttcgggatctgacacagagaga
gtagccagccctgatataacaagaaacacggagtctccccagggacaagggtctgtcaag
aaggggcagtcctctaggagcagggcaatggtgtatgtgccaaggataccagctccttat
cctgccatgtactatccttatcagccttatccaggatattactacctacccgaggaccca
aggttagcccagactcatgcaaggtacccttacattgccccagggataccaccccaagtg
tatccacacccttacccggctggcccatacatcggtactccaatcagaccacctcagggt
ggttctcctgagaataccccttcaccgggtgaaagaagtcccaactcccaaaggagccac
tctctgtctccaggaccccagagacctccaagatcacagtctcctgctatgtctccaaac
tctgctgccgctgttgctgctgctgcagccgctgctgctgctgctggggcaggcccccat
ttccagttgctgcccaacgtgaagcacatccctgcccatctgtataccaaagcaggaagt
tctgcaggcaactccaggtctagcactcctctaggtgggagagattcacctgccactgaa
agagctggggaggaggtgagagccagctttgagcatgattatctgaagtctgttagtccg
aaactggacttgcaagaaaggagagcatctgcacagagcccattggcaagggttatctca
caaagacaagggtacattcgagatgagctggaggctatgacattacctggaggtcaaagg
actcactaccagaatattgtcaccacaacaaggagtagcagtggttccatgcagaacggg
tcacgagtgatggagaaaggtaggagcaacaagaaaccgtcaaaattagaactccactca
acgacaggattcagccggcagttcagtgaagacatcaccaccccaacggaaatcacaaac
ttggtgaagatgattgacgacaatgatgatgtggacatggagaccagacaactgacccac
cagtcatatgccgcacagaaaaacacctctgggcgtctgtacctgaatatcccctcgcag
caggaactagccatgggagaatctgcttcttcatccccgccctcagggagtcctccattg
ggtgaccagaaaccgacctatgccggtgtactgagaaggagactgccctcagctcagggg
gacatggacctcagtttgcttgagccccagacaccccacactcctcttggattcacgact
cctggtacagaaatcgacacggatccactgggcattcttcgaaatctgaacatcaattct
tcggctgagaatcaaagaacttacaagtatttttcttag
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integrated database retrieval system
