Magallana gigas (Pacific oyster): 105338779
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Entry
105338779 CDS
T03920
Name
(RefSeq) THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg03013
Nucleocytoplasmic transport
crg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105338779
09122 Translation
03013 Nucleocytoplasmic transport
105338779
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crg03019
]
105338779
03041 Spliceosome [BR:
crg03041
]
105338779
Messenger RNA biogenesis [BR:
crg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
105338779
Spliceosome [BR:
crg03041
]
Complex C
Other components
EJC/TREX
105338779
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
105338779
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Death
PEPCK_PPi_lobe_2
BROMI_N
Motif
Other DBs
NCBI-GeneID:
105338779
NCBI-ProteinID:
XP_034312633
LinkDB
All DBs
Position
7:31139590..31147598
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AA seq
663 aa
AA seq
DB search
MAASMKFVFGNARDVFCRKLDSLENNHDWKEIFQSVCGSEAEKKLAVDQALRDSMKDVVM
RADDCEEYKKVILHSIEMAKEDLCSVIMPFVLLSDIFDLITLSQCEIVFYLVEEKLPVWK
TPLFYDSGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLSRLFPLSEKSALNLMSQFNLE
NVTVFSTKSEEVKPKSHDISDDVMEVEEGEMEDLTGSTPVDYNLYRRFWALQDYFRKPTQ
CYDKVPWKAFQQNADVVLNAFASAKLDDMKSSRRKLDLPRPADTRAFFAKYLTSEKLLDL
QLNDSNFRRYVLVQFLILFQYLNSQVKFKSASQNLSDEQNQWIKTIQDKVYQLIRETPPD
GEQFCKIVQHILAREEHWNKWKNDGCPDFARKPVAEDTKIKSRAKRRWVGDDLQAHGGKI
IKMGSAELTRLWNINPDNMEACKAEKRVFLPSLEDFFAEAMEQADPEAKVEEQYKMVNNP
VFQWKSLRLLARQSPHFFGQHHTPAMPLPQYLELMLNKIAQELPSTGSNGDVAPEGNNEE
MKTEVGDDEAIKESQEVEDEELKAQAEEAGREEIPEDILSKDQIELVAEKLGEDWKRLGT
ELNFPEDDMSYFETENNEQVACAKKMLTIWQENEGDRATAGTLKIALKEVGLTEVIDAVF
GST
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atggctgcttccatgaagtttgtgttcggaaatgccagggatgtattttgtagaaaactt
gattctttggaaaacaaccatgattggaaagaaatattccagtcagtttgtggaagtgaa
gctgagaaaaaattggctgtagatcaggcattgcgagacagcatgaaggatgtagttatg
agggcggatgattgtgaagagtacaaaaaagtcatcttacattccatagaaatggcaaag
gaagatttgtgttctgtaatcatgccattcgtccttctgtctgatatatttgacttgatc
acattgagtcagtgtgaaattgtcttctacttagtggaggagaaactacctgtgtggaaa
acaccactgttttatgattctgggaaaaactatcttttgaggatgtgcaatgatctgctc
agaaggttgagcaagtcacagaatacagttttctgtgggagaattcagctgttcttgtca
agattgttcccgttgtcagaaaaatcagctttgaatctcatgagtcagtttaacctcgaa
aatgtgacagtgttttccacaaagtcagaggaagtcaagcccaaatctcatgatatttct
gatgatgtcatggaggttgaagaaggggaaatggaagatctcacagggtcaacaccagtt
gattacaacttgtacaggaggttttgggcacttcaggattactttagaaagcctacacag
tgttatgataaagtcccttggaaagcatttcagcagaatgctgatgtagtactgaatgcc
tttgccagtgcaaagctggatgacatgaaatcatcacgaaggaaactagatttacctcgg
ccggcagacacaagagcattctttgccaaatatttaaccagtgaaaagttgctggacctg
caattgaatgacagtaatttcagaagatatgtgctggttcagttcctcatccttttccaa
tatttaaactcacaagttaaattcaaaagtgccagtcaaaatctttctgatgaacagaat
cagtggatcaaaacaatacaggataaagtttaccagctaatcagagaaactcctcctgat
ggagagcagttctgtaagatagtgcagcatatcttagcaagagaagaacactggaataag
tggaaaaatgatggatgcccagactttgcaagaaaacctgttgcagaagacacaaaaata
aagtctagagcaaaaagacgatgggtaggagatgatcttcaagcacatggagggaaaatt
atcaaaatgggcagtgcagagctcactagattatggaacatcaatccagataacatggaa
gcctgcaaagcagagaagagggtatttttaccttcattagaagatttctttgctgaagcc
atggagcaagctgatcctgaggctaaagttgaggaacagtacaaaatggtgaataatcct
gtattccaatggaagtcgcttcgacttctagcgagacaaagcccccatttctttggtcag
caccacactcctgccatgcctctccctcagtacttggaacttatgctaaacaagatagca
caagagttgccatccacaggctccaatggagatgtagcaccagagggaaacaatgaggaa
atgaagacagaggtgggagatgatgaggctattaaagagtcccaggaagtagaagatgaa
gaactcaaggctcaggcagaggaagcaggacgagaagaaataccagaggacattctgtca
aaggatcaaatagaacttgttgctgaaaagcttggtgaggactggaaaaggcttggcaca
gagttaaacttccctgaagatgacatgagctattttgagacagaaaacaatgaacaagta
gcttgtgcaaaaaagatgttgactatttggcaggaaaatgagggtgatagagcaacagct
ggtaccttaaagatagcactgaaggaagtggggctgaccgaagtgatagatgctgtgttt
ggatctacatga
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