Magallana gigas (Pacific oyster): 105339436
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Entry
105339436 CDS
T03920
Name
(RefSeq) collagen alpha-1(I) chain isoform X1
Organism
crg
Magallana gigas (Pacific oyster)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Endostatin
Collagen_trimer
Laminin_G_3
DUF1554
Motif
Other DBs
NCBI-GeneID:
105339436
NCBI-ProteinID:
XP_011443284
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Position
2:complement(55838009..55869958)
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AA seq
1297 aa
AA seq
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MWYGNILGLVLTQTIFLLTPVRGQDPDGTIDLLSAIGIPDSKRGISYSVGLDGAPAFEFK
ENAVIKEPAQAYFKDQIYKDFAIGITVKPYKRTGGFLFAVKNLYNTVVQFGVELTGNQLK
LHYTLEARYAKSSTVIATFDIGDIYNKWTKLSIKVKDNAVTLYKNCANLGSVAVQGGGGP
MDVEGGANLYVGQAGDNFNNVFAGALQELKVYKEPAEAENFDCDDQLYGSGSGSSGDDKD
PGEPFIPPITPPPPSTYKGEKGERGEQGFKGDKGDQGLPGQTAGPAGDGAKGEKGDQGEP
GVKGDMGLPGIDGASGPPGDPGVEGPPGAPGSPGEKGDAGLPGDPGTPGIGVQGPKGEPG
APAVLNMKDIEDFIQTRIPESGSNGEKGEKGDQGDKGDTGPRGDTGLPGIPGADGLIGPM
GPDGLKGETGDSIVGPAGPPGKDGKPGVPGLKGDSGERGEPGLRGPPGPPGLAVEGSGNG
ESIPGEPGLPGTPGQKGDRGEPGPQGIKGEPGTFDGDINDLIGPRGPAGEPGLPGVPGSA
GVPGKEGPEGPPGLKGDRGDPGLPGVEGRPGSEGPAGVPGDSGPRGLPGAQGLPGTPGQP
GLPGPPGTCSPSSRRGDTGITGLGDDDLEFSGDGCGGGDCTCVGSPGRDGINGTEGPRGL
PGSPGPRGEKGEMGIQGPEGRPGPPGMKGDQGSQGEVGRNGAQGPQGETGAMGSPGLPGV
SGEPGLPGLRGEKGQKGEEGVGIPGKDGKDGAEGPPGPPGPPGPPGQSISIVDPGSGGGE
VIEGAQGPKGEKGDAGLVGTQGIAGLPGVDGMKGDRGDKGDKGDVGDTGIQGLTGNKGDK
GDTGPVGPPGLPGAGSGGSVSGVKGEPGEPGVPGNPGPQGPIGPRGLPGRKGDIGMPGIP
GRIGFRGRKGDRGFGPRGFKGDKGDSGAPGPPGPGLGSSGEIIRGAKGDRGERGLPGLPG
TGVQGERGLPGAPGPRGFPGLPGAKGDQGDPGKKGEPSYIQGPPGPPGTPGTPGYSQGGN
GNGKGLVTFKDFNNMLYAAKNLEVGTMTFTLKEEEIYVRVTDGFKQIQGRKISLSSNTIK
PPSEKPTDSTTIATSPTSTSPVTTPKPVPLPGPDSVMQADQPRLYMYALNTPKNGKLRGL
TGADYACYKEAYYSGMHGRTFRAFLASKTQNLYSIVSDRNIPIVNKNDTIIFSSFNDLLR
TGGRFNRNVKIYTFDGEDVMSSPKWPEKMVWHGADSQGNKMNDKECSDWRSDSPNRVGYA
GSLNGGKLVDMHEASCRKELIVLCIEVLPKSRNKPSK
NT seq
3894 nt
NT seq
+upstream
nt +downstream
nt
atgtggtatgggaatatattagggttggttttaacccaaacaatatttcttttgacaccg
gtgcggggacaagatccagatgggacaatagatttactgtcagctattggaatccccgat
agtaagcgaggaatcagctacagcgtagggttggatggggctccagcgttcgagttcaaa
gaaaatgctgttattaaggaacctgctcaagcatatttcaaagaccaaatttataaagac
tttgccattggtataactgtgaaaccttataaaagaactggtggatttttattcgcagtg
aaaaacctttataacactgtggtacagtttggtgtcgaattgacagggaaccagttgaag
ttacattatactctagaagctcgctatgcaaagtcatccactgtcatcgctacatttgac
attggagatatttataataaatggaccaaattgtcaataaaagtaaaagataatgcagtg
acattatataagaattgtgccaatttaggatctgtagcggtccaagggggaggcggacca
atggacgtggaggggggagccaacttgtatgtgggacaggcaggggataacttcaacaat
gtatttgctggagccctccaagaactgaaagtatataaagagccagctgaagccgagaac
tttgattgcgatgatcagctttatggaagtggatcggggtcatctggagacgacaaagat
ccgggcgagccttttattcctccaatcactcctcctcctccatcaacttataaaggggag
aaaggtgagcgtggggaacagggatttaaaggagacaaaggtgaccagggcttacctggg
caaaccgcaggaccggcaggtgatggagccaaaggtgaaaagggtgatcaaggagagcca
ggagttaagggagacatgggactgccaggtattgatggggcaagtgggccacctggagac
ccaggtgtagagggcccgcccggtgctccagggtccccaggagaaaagggagatgctggt
ctgccaggcgatccaggtactccaggaattggagttcaaggtcctaagggagaacctggg
gcacctgctgtcctaaacatgaaagacattgaagatttcatacaaactcgtatcccagaa
tcaggatccaatggtgaaaagggagaaaaaggagatcagggagacaagggcgatacagga
cctcgaggcgacactggattacctggaatacctggcgctgatggtcttataggtcctatg
ggacctgatggtctcaagggtgaaacaggtgactctattgtgggccctgctggaccacca
ggaaaagacggaaaaccaggtgtaccaggactaaagggagactcaggagagagaggagag
cccggtctcagaggtcctccggggcctcctgggctggctgttgagggatcagggaacggt
gaaagcattcctggtgagccaggtcttcctgggaccccagggcagaagggagacagggga
gaaccaggacctcagggtattaaaggagagcctggaacttttgacggtgacatcaatgat
ctgattggaccaaggggcccagcaggggagccaggtcttcctggagtacctggatcggca
ggtgttcctggaaaggaaggacctgagggacctccaggactcaagggtgaccgtggagat
ccaggcctaccaggagttgagggacgacccggatctgagggaccagctggagttccaggt
gacagtggacctcgtggtctgccaggtgcccaaggtttgccaggtacgcctggtcagcca
gggctcccagggcccccaggaacctgttccccgtcctcaagacgaggagacactggcatt
acagggctgggtgatgatgatctggagttctctggggatggctgtgggggtggggactgt
acatgtgtaggatccccggggcgagatggaatcaatggcacagagggaccacgaggtctc
cctggatctccagggcccagaggagagaagggtgagatgggaattcagggccctgaagga
aggccgggacctcctggcatgaaaggtgaccaaggatcacagggagaagtaggaagaaat
ggggcacagggaccccagggtgagacaggtgcaatgggatctccaggtctaccaggtgtg
tcaggtgaaccaggcctcccaggattacgaggagaaaagggtcagaaaggagaggaggga
gtgggtatcccaggtaaagatggaaaagatggtgcagaaggacccccgggacctcctggt
ccaccaggacctccaggacaatctatcagcattgtcgatccagggtcagggggcggagaa
gtaatagagggagcacagggtcctaagggagagaagggagatgcaggtctagtgggcact
caaggtatcgctggtctgccaggtgttgatggaatgaagggagacagaggtgacaagggg
gataagggggatgtcggcgacaccggaattcagggtctcactggtaacaaaggagataag
ggagacacaggacctgttggacctcccggtcttcctggggcaggaagtgggggatcagtg
tcgggtgtgaaaggggaaccaggagagccaggagtacctggtaatccaggacctcaaggt
cctataggacctcgaggattgcctggacgcaagggagacataggaatgccagggataccg
ggtcgcataggtttcagaggaaggaaaggtgatcgtggatttggaccccgaggatttaaa
ggtgataaaggagattcaggtgcccctggacctcctggaccaggtcttggttcaagtgga
gaaatcatcagaggagccaagggagatcgtggggagagaggattacctggactcccagga
acaggtgttcaaggagaaagaggtttaccaggggccccaggacctagaggcttcccaggc
cttcccggtgcgaagggcgatcaaggagatcctggtaagaagggagagccatcctacatc
caggggccgccaggacccccaggtacccccggcaccccagggtacagtcaagggggcaac
ggaaacggcaaaggacttgttacttttaaagacttcaacaacatgctgtatgcagctaaa
aatcttgaagttggaacaatgacttttactctgaaagaggaagagatctatgtacgagtg
acggatggattcaaacagattcagggtagaaaaatatcgctgagctctaataccatcaaa
cctccttcagaaaaacctacagatagtactaccattgctactagtcccactagtacctcg
cctgtgaccacccctaagccagtccccctccctggtcctgacagtgtgatgcaggccgac
cagcccaggttgtacatgtatgccttgaatacgcccaagaacggaaagctgcggggtctg
accggggccgactacgcctgttataaggaagcctactactctggcatgcacggaagaacc
ttcagggctttcctggcctccaaaacccaaaacctttactccattgtctccgacaggaat
attcctattgtgaacaaaaatgacacaataatcttcagctcttttaatgacctgttacga
actggaggaagatttaacaggaatgttaagatctatacattcgatggagaagatgttatg
tcaagtcctaaatggccggagaagatggtctggcatggcgctgatagccagggtaacaag
atgaacgacaaagaatgctccgactggcgctcagacagtccaaaccgggtcggatatgca
ggctcgctaaacgggggcaaactagtggacatgcatgaagccagctgccgtaaagagctg
attgtgctctgtattgaggttttaccaaagtcacgtaacaaaccttccaaataa
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