Magallana gigas (Pacific oyster): 105339479
Help
Entry
105339479 CDS
T03920
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7
KO
K14409
protein SMG7
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105339479
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crg03019
]
105339479
Messenger RNA biogenesis [BR:
crg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
105339479
mRNA cycle factors
Common to processing body (P body) and stress granule
105339479
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
105339479
NCBI-ProteinID:
XP_011443357
LinkDB
All DBs
Position
2:complement(24892937..24903860)
Genome browser
AA seq
1166 aa
AA seq
DB search
MSSAAQVLRQADALKASITDSSKGVSETWVVRQRLEDLYKKLLLMDLEYALDKKVEQDLW
NHAFKNHINILQTQTKDRQNAKRGETHATLNLFLETASGFYLQLIQLICTTFKLDLPFRR
KSSCFGIMKEKTTLRVKIVPPKKSSCLYVCQYCLVHLGDIARYRQQIEQAQTFYWHAANL
VPFNGQPYNQLAIVEAARGNKLTTVFYYVRSLAVRHPFPAAATNLEKLYTKLTKDIPELK
GKLSVSEMITSFLQLHACIHLCTELDRAAALSSKLLAALPAHVTSQSFPSHILVQIVAIN
IFSMHHAQRMTQYQDGEERADSFSEELGSEELRSFSLMFSFTIGILDLLLQNTPKQEQKL
KEFFTLPAVKLLLDWFKLNPVHLQNPILKSSSVMTNLCKVLNNIKLSDNEGGPNISKYED
LPLPEDTELRCFQYLEKAHSMYSYSRLPTEGLPSEVESMLRCMRIYSHGTWLAEETESIS
AQQGKSGRLQFTAPTIQKPISSVYEAGESQVPFVEKKSVRQNIAIQAIIQKKGQQQAADK
TPKVVPTKIQERVKPPPSVSAEPVKTIVTSTASGPNSPKYLLGVPTTEPQFMKGGSTGVV
GNSRSGTQSSRVPIAQQPPRLQKQLLAQQQQQQGSSQPTLWSENATPQILSKPSASQQKL
LWPYSLQQQSEQNVSKSDSNSSVHSAQSDTSPGKVGAQQPSQQTSEVQRSQLEKQSPSNF
MNMPTVTSDYRMTSRFPVTTNQPSMAPQNMPVNAKNPGSCQNTALQGTAGSNAMFRFPPP
PLPPNSKQFPSMTFDVPPPPLPQPMNMSSAETESRTGFTHQMSSRHQPEKNQQNVMAENA
FQQNQSLVNPQRAPQGTNYPSNSNQQHTQSSPLTGNIGNQMQGGVRNLFQNLPPQGFQQM
APGNERPHFGGPTNERSPFGGLKPQTVPSQLQNTASQYQLLNQLLSMNAGMGRMNLRAPM
DQPGKKDDFPFVPPELLGALSQLAVQPPNISKEGLMLQNRMGAAFQGHAEGTPKPDTGNS
PNRSPMPGPADLDSRPPRPGPQTTQQGTYSLFSSSPWSVPLSTADNKSHGPSPFSEEPNM
VRHSPKAEVTEPKMPQGIDMGLRFGHNEEVWLEKSQKGAPPADHNPASGPGPYFPGPLQS
IWSSPGPSPLEKLLEMQKQQRTTDPH
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgagttcagcagctcaagtattgagacaagcagatgcattaaaagctagcataacagat
tcctcgaaaggcgtttcagaaacatgggttgtgagacaaagattggaggatctgtacaaa
aaactgctccttatggacctggagtatgccttggataagaaagtggaacaggatttatgg
aaccatgcatttaaaaaccacatcaatatcttgcagacccagaccaaggacagacagaat
gcaaaaaggggtgaaacacatgccacactgaacctctttctggagacagctagtggattt
tacctgcagttgatacaattaatttgtactacattcaaactggatttgccatttagaagg
aagtcatcatgttttgggataatgaaagaaaaaacaacactgagagtgaagattgtgcca
cctaagaaaagctcctgtctgtatgtctgtcagtactgcttggttcaccttggagatatc
gctcgatacagacaacagatagaacaagctcagacattttattggcatgctgccaacctt
gtgccatttaatggtcaaccctacaatcagctagccattgtggaggctgcgcgagggaac
aagctgaccacagtgttttactatgtgagaagtctggctgtcagacatcctttcccagct
gcagccaccaacctggaaaaactgtacactaaactcaccaaggacattccagaattgaaa
ggaaaactctctgtgagtgaaatgatcacatcatttctacaactccatgcctgtatccat
ctgtgcacagaactagatagagcagctgccctgagctccaaacttctggctgccttacca
gctcatgtaacgtcccagagtttcccatcccacattcttgtgcagattgtggccatcaac
atcttctcgatgcaccatgcccagcgtatgacccagtatcaggatggtgaggaacgtgca
gactccttcagtgaggaactgggcagcgaggagctgaggtcgttctctctgatgttcagt
tttaccattggcattttggacttgctgttgcaaaataccccaaaacaggaacagaaactc
aaagaattcttcactctaccagccgtgaagcttttgcttgattggttcaagttaaaccct
gtacacctgcaaaatcctatcctaaagtcatctagtgtaatgacaaatttgtgtaaagtt
ctgaacaacatcaagctgtctgataatgaaggcggtccaaatatttctaaatatgaagat
ctacctttaccagaagatacagaactaagatgttttcagtacctggagaaagcacacagc
atgtacagctacagtcgcttgcccacagagggcctaccctcagaagtggagtccatgttg
aggtgtatgaggatctactctcatggaacctggttagctgaggagacagagagtataagt
gctcagcaaggaaagtctgggagactacagtttactgctccaactattcaaaaaccaatc
agttcagtgtatgaagctggagaaagtcaagtgccatttgtagaaaagaaatctgtgcgt
caaaatattgccattcaggcaattattcaaaagaaaggccaacagcaagctgcagacaaa
actcctaaagttgttccaactaaaatacaagaaagagttaaaccaccaccgtctgtaagt
gcagagccagtgaaaacaattgtcacatcaacagcctctggcccgaactccccaaaatat
cttttaggtgtaccgaccactgagcctcaattcatgaaagggggaagcactggtgtggta
ggtaattcaaggtcaggaactcagagctcaagagttccaatcgcacaacaaccaccgaga
ctgcagaaacagttgctggcacagcaacagcaacaacagggctcttctcaaccaaccctg
tggtcagagaacgcaacaccacagattctcagcaagccatcagcttcacagcaaaagtta
ctgtggccatattcacttcaacagcagtcagagcaaaacgtttcaaaatcggacagcaat
tcttcagtacattcagcacagagtgacaccagtcctggtaaagtgggagcacagcagccc
tctcagcagacgtcagaagttcaaaggtcacagctggaaaaacaatcgccaagcaatttt
atgaacatgcctactgttacatctgattacaggatgacatcaagatttccagttacaact
aatcaaccatcaatggcacctcagaacatgccagtcaatgctaagaaccctggatcatgt
caaaacacagcattacaggggactgctggaagcaatgcaatgtttaggtttcctccacca
cctctgccaccaaacagcaaacagtttccttctatgacttttgatgttcctccaccccct
ttaccacaacctatgaacatgtcaagtgcagaaacagagtcaagaactggttttacccat
caaatgtccagccgacatcagcctgaaaagaatcaacagaatgttatggcagaaaatgct
ttccaacagaatcagtcacttgttaaccctcaaagggctcctcaagggacaaattatcca
agcaactcgaatcagcaacacacacaaagcagcccacttacgggaaatattggtaatcaa
atgcagggaggagttagaaatttatttcaaaatctcccaccacaaggctttcagcaaatg
gctcctgggaacgagagacctcactttggaggtcctaccaatgaaaggtcaccttttgga
ggactgaaaccacaaacagtgccatcacagttacagaatactgcctctcagtaccaactg
ttgaaccagctactaagcatgaatgctggcatgggaaggatgaacttgagagccccaatg
gatcaaccaggaaaaaaggatgatttcccctttgttcccccagagttgttgggagcactt
tcacagcttgctgttcagccaccaaatattagcaaagaaggcttgatgttgcaaaacagg
atgggtgctgcttttcaaggtcatgctgagggaacaccaaagcctgacacagggaactct
ccaaacagaagcccaatgcctggccctgctgacctagattctcgtccccccagaccaggg
ccgcagaccacacaacaaggaacgtactcactgttcagcagctctccatggtctgtgcct
ctgtccactgcagacaacaaaagccatggaccatccccattctctgaagagccaaacatg
gtaagacattcaccaaaagcagaagttactgagcccaagatgccacaaggaatagacatg
gggctgaggtttggtcataatgaggaagtttggcttgaaaaatcacagaagggtgcacca
ccagcagaccacaaccctgcatcaggaccagggccttatttccctggaccattacagtca
atctggtcatctcctggtccatctccattggaaaagctcttggaaatgcagaaacaacag
agaaccacagatccccactga
DBGET
integrated database retrieval system
