Magallana gigas (Pacific oyster): 105339544
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Entry
105339544 CDS
T03920
Name
(RefSeq) hypoxia-inducible factor 1-alpha-like
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg04137
Mitophagy - animal
crg04140
Autophagy - animal
crg04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
105339544
04137 Mitophagy - animal
105339544
04148 Efferocytosis
105339544
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
crg03000
]
105339544
Transcription factors [BR:
crg03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
105339544
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAS_3
PAS_11
bHLH_HIF1A
PAS
PAS_9
HIF-1
HLH
PAS_4
HVO_2928_N
Motif
Other DBs
NCBI-GeneID:
105339544
NCBI-ProteinID:
NP_001292266
UniProt:
B6ZGN4
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Position
6:<3701757..3759967
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AA seq
698 aa
AA seq
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MSSNTKRRNSEKRKEKSRDAARCRRGRETEIFSELAEQIPQYSGSNGQLDKASIMRLAIS
YLKISQIMETQRNNRHAPCEEFDSLYSKALDGFVVILSNEGDLIYISESVSKYLGIQQVD
LVGQSIYEFVHPCDHEDITDIFHSNGRDKKKKKSEEFHHTFFVRMKCTLTNKGKNVNLKS
ATYKVIKFSGKLVKDKIKKECGGEGNAPYLLLIGEPIPHPSNIEIPLDQMTFLSRHNMDM
KFTYCDDRVKDLLGYNCSDLMNKSLFDYHHAMDSEVIDQAYKNLIAKGQVMTRQYRFLAK
TGGHVWMITQGTVIYNSRTQKPQCIVCVHYVLSGIENPSLILSTAQQVFSQQVPMLPLEV
KLSTEDVFKPRPDNVKVDEFYFPPGVKMPSMKMDETVDLTHLAPTSGDTCVPLIGDDCVQ
FSPDQPMPALKEEPDMFSARICSHAIKSPLATPPSVSPAPISPMDYTTPLTPSVVDAMDK
FFSNVETYQRNDQATADLDMDMRAPYIPMNKKEDFSLLPPTSDALFTINSDFNPGLFGRT
ESVFVPKDKLYQDPPKEPRMSIRDMLVGSTAVASIEQPPDTFNLQLKRPLDMNSLEKGPP
SKKRFIQDYQEPTKKHSVLMSLLVNGEDPPTGYSVRKPQQHQAKPYFPAMGHRDSLSGGK
RLPTMPQTQEVIETPDLLLQNPDLLAALELFLPDSELM
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atgagctctaatacgaaaagaaggaattcggagaagaggaaggagaagtcgcgtgatgcg
gcccgctgtcgtcgtgggcgagagacggagattttctcggagctggcggagcagatccca
caatacagcggcagtaatggtcagctggacaaggcatccatcatgaggctggccatcagc
tacctgaagatcagtcagatcatggaaacccagcgtaacaacagacatgccccctgtgag
gaatttgactcgctgtacagcaaagctctggatggattcgtagtcattctctctaatgaa
ggagacctcatctacatctcagaaagtgtctccaagtacctgggaattcagcaggtggat
ctggtgggacagtctatctacgagtttgtacacccatgtgaccatgaggacatcacggac
atattccacagcaacggccgcgacaagaagaagaagaagtcagaggagttccaccatacc
ttctttgtcagaatgaagtgcaccctgaccaacaaggggaaaaatgtcaacctcaagtca
gcaacatacaaggtcatcaagttttctggaaaactggtaaaggacaagataaagaaggag
tgtgggggtgaggggaatgcaccctacctgctgttgattggggaacccattcctcacccc
tcaaacattgagatccccctggatcagatgacctttttgagccggcacaatatggacatg
aagtttacttactgtgatgacagggtaaaagatttgctgggttacaactgttctgaccta
atgaacaagtccttgttcgattaccaccatgccatggacagtgaggtcatagaccaggcc
tacaaaaacttgattgctaagggacaagtgatgacaaggcagtatcgattcctggccaag
acagggggacacgtttggatgataacacaggggactgtcatctacaacagccgcacccag
aaaccccagtgtattgtgtgtgtccactacgtcctcagtggaattgagaatccaagcctg
attttgtcgacggctcagcaggtgtttagccagcaagttcccatgctgcccctggaggtt
aaacttagcactgaggacgtctttaaaccgaggccagacaacgtcaaggtggacgagttc
tacttcccaccgggcgtcaagatgccgtcaatgaagatggacgagaccgttgatctgacc
cacctggctccgacctcgggcgacacctgtgtacccctgattggagatgactgtgtccag
ttctctccagaccaaccgatgccagccctgaaggaagaaccagacatgttcagcgcccgg
atctgctcccacgccatcaagtcccccctcgctaccccaccgtcggtgagccctgcaccc
atcagccccatggattacaccacccccctcactccgagtgtcgtggacgccatggacaaa
ttcttctcaaatgtggaaacctaccaaagaaatgatcaggccactgcggacctggacatg
gacatgagggctccttatatccccatgaacaagaaggaggacttcagcctgcttcctccg
acaagtgatgcattgttcaccatcaacagcgactttaatccagggttgtttggtcgcacg
gagtctgtgtttgttcccaaggacaaactttaccaggacccacccaaggagccgcggatg
agtattcgtgacatgttggtgggcagcaccgccgtggccagcatagagcagcctcctgac
accttcaacctgcagctgaagcggccccttgacatgaacagtctggaaaagggacctccc
agcaagaaacggttcattcaggattaccaggagccgactaaaaagcacagtgttctaatg
agtctcctggtcaacggggaagacccacccacagggtactccgtgaggaaaccacagcaa
catcaggccaagccatattttccagccatgggacacagggacagcctctctggtggtaaa
cgcttgcccacaatgccacagacacaggaagtcattgagactccagacctcttgcttcaa
aatccggatctattggccgctctggagttgtttttacctgactcagagctgatgtga
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