Magallana gigas (Pacific oyster): 105340059
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Entry
105340059 CDS
T03920
Name
(RefSeq) clathrin heavy chain 1 isoform X1
KO
K04646
clathrin heavy chain
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg04142
Lysosome
crg04144
Endocytosis
crg05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
105340059
04142 Lysosome
105340059
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
105340059
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
crg04131
]
105340059
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
crg04147
]
105340059
Membrane trafficking [BR:
crg04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
105340059
Exosome [BR:
crg04147
]
Exosomal proteins
Proteins found in most exosomes
105340059
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_COPA_B
HEAT_Nup120
TPR_Vps41
Motif
Other DBs
NCBI-GeneID:
105340059
NCBI-ProteinID:
XP_011444196
LinkDB
All DBs
Position
3:48528105..48540919
Genome browser
AA seq
1691 aa
AA seq
DB search
MSQLLPIRFQEHLQLQNVGINAANIGFSTLTMESDKYICVREKVGDTAQVIIIDMNDSSN
PIRRPISADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKSHTMTEDVIFWKWISVNTVA
LVTDACVYHWSMEGDSQPQKMFDRHTNLAGCQIINYRTDAAQKWLLVVGISAQTGAEGGM
SADSQNRVVGAMQLYSVERKISQPIEGHAAAFTQFKMEGNPQPSTLFSFAVRGAQGGKLH
IIEVGQPPQGNQPFTKKAVDVFFPPEAQNDFPVAMQMSQKHGVAFLITKYGYIHLYDIET
GTCIYMNRISGDTIFVTAPHEATSGIIGVNRKGQVLSVSVEEDNIVQYVTTNLQNPDLAL
KIASRGNLPGAEDLFVRKFNNLFQSGNYQEAAKVAASAPKGILRTPQTIQRFQQVAAQPG
QSSPLLQYFGILLDKGQLNKYETLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKS
VDQNLALSVYLRANVPGKVIQCFAETGQFQKIVMYSKKVNFTPDYIFLLRSLMRINPEQA
LQFAQMLVEDDEPLADLNQIVDVFMEMNLIQQCTSFLLDALKNNRPSEGPLQTRLLEMNL
MSAPQVADAILGNQMFTHYDRAHIAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPE
WLVTYFGSLSVEDSLECLKAMLQANIRQNLQVCVQIASKYHEQLGTNSLIEIFESFKSFE
GLFYFLGSIVNFSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLT
DQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYIQKVNPARLPVVIGGLLDVDCSEDAI
KQLIMVVKGQFSTDELVAEVEKRNRLKLLLPWLEMRVHEGVQEPATHNALAKIYIDSNNN
PERFLKENQFYDSLVVGKYCEKRDPHLACVAYERGQCDEELIQVCNENSLFKSQSRYLVK
RRDMDLWAKVLNEDNEFRRQLIDQVVQTALSETQDPDDISVTVKAFMTADLPNELIELLE
KIVLDSSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAITNELYEEAF
AIFKKFEVNTSAIQVLIDNVKNLDRAYEFAERCNDPAVWSQLGRAQLNENMVKEAIDSFI
KADDPSQYMEVVNVAASNNSWEDLVKFLQMARKKARETFIETELVFAYAKTNRLADLEEF
ISGPNHANITQVADRCFDNKMYEAAKLLYNNVSNYARLAITLVHLGEYQGAVDGARKANS
TKTWKEVCFACVNNEEFRLAQMCGLHIVVHADELEELINYYQDRGFFEELISLLEAALGL
ERAHMGMFTELAILYSKFKPEKMREHLELFWSRVNIPKVLRAAEQAHLWPELVFLYDKYE
EYDNAIIAMMNHPTEAWKESQFKDIITKVANIELYYKAIQFYLDFKPLLLNDLLMVLTPR
LDHTRAVNFFIKVKQISLVKPYLRSVQKNNNKAINEALNNLLIEEEDYQGLQASIDGYEN
FDNIMLAQRLEKHELIEFRRIAAYLYKGNNRWKQSVDLCKKDKLFKDAMCYASESRDTGI
AEDLIAWFLENQYHECFAASLFQCYDLLRPDVILELAWRHNIMDFAMPYMIQVVREYISK
VDKLEQAENVRSEEEQKAEERPIVFAEPQLMLTAGPSNMMPPPQAPSPQPPYGGPAYPGM
GGGVPTYGYSM
NT seq
5076 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcagttgcttcctattaggttccaggagcatttacagctccaaaatgttggaatc
aatgctgcaaacattgggttcagcacccttactatggaatcggacaaatacatctgtgtc
cgagaaaaggtgggtgatactgcccaggtgatcatcatagatatgaatgacagctccaac
cctattcgcagaccaatatctgctgattcagccatcatgaatcctgcgagtaaagtcatt
gcattgaaagctggtaagactcttcagattttcaacatcgagatgaagagcaagatgaag
tctcacacaatgacggaagatgttatattctggaaatggatttcggtgaacactgtagct
cttgtcactgacgcatgtgtttatcactggagcatggaaggtgactcccaaccacagaag
atgtttgacagacacacaaaccttgccggttgtcagattatcaactacagaacagatgca
gctcagaagtggctccttgttgttggaatatctgcccagactggggcagaaggaggaatg
agtgcagattcacaaaatcgtgttgttggtgccatgcagctgtattcagtggagaggaag
atcagtcagccaatagagggtcatgctgcagcgttcacacagttcaagatggagggtaac
ccccagccatccacactcttctcttttgctgtcagaggagcacagggaggaaagcttcac
ataattgaagtaggtcagccccctcaagggaatcagccattcaccaaaaaagctgtagat
gtgttctttcctccagaggcacagaatgatttccccgtagcaatgcagatgagtcaaaaa
catggtgttgcatttctgatcacaaaatatgggtacattcatttgtatgacatagaaact
ggtacttgcatttacatgaacagaatcagtggagacacaatatttgtcactgctccacat
gaggccacctctggaatcattggtgtcaacagaaaaggacaggttctttcagtcagtgta
gaggaagacaatatcgttcaatacgttaccactaacctgcaaaacccagacctggctttg
aaaattgcctccaggggtaatctgccaggggctgaagacctgtttgttagaaaatttaat
aacctattccagagtggaaactaccaggaagctgccaaggtagcagctagtgctcccaag
ggaattctaaggacacctcagaccatccagaggttccagcaggtagctgcacagcccgga
cagagctcaccactgctgcagtactttggtattctgctggacaaggggcagcttaacaaa
tacgagactttagagttatgtcgtccagtactacagcaaggccgcaaacagcttctagag
aaatggcttaaagaagacaagcttgaatgcagtgaagaactaggagaccttgtcaaatca
gttgatcagaacttggcactgtctgtatatctgagggccaatgttcctggaaaggtcatt
cagtgttttgccgagacgggacaattccagaagatagtgatgtattcaaagaaagtgaac
tttacccccgattacatcttcttgttgagaagtctaatgaggattaaccctgagcaagct
ctacagtttgcgcagatgttggtggaagatgatgaacctctggctgatctgaaccagatt
gtggacgtgtttatggagatgaacctgatccagcagtgtacttcgttcttgttggatgct
ctaaagaacaacaggccatcagagggtcctctacagaccaggctactggagatgaacctg
atgtcagcccctcaggttgctgatgccattcttggaaatcaaatgtttactcactacgac
agagcacacatcgcccagctgtgtgaaaaagctggactcctgcaaagggcattggaacac
tacaccgatctgtatgacatcaaaagagctgttgtacacacccatctcctgaacccagag
tggctagtgacctactttggatccctgtctgttgaggattcactggaatgtctgaaagcc
atgctacaggccaacatcagacaaaatctgcaagtctgtgtacagatcgcctccaagtat
cacgagcagcttggcaccaacagcttgatcgaaatctttgaatcattcaaaagctttgaa
ggtctattctacttcctgggatctattgttaacttcagtcaggatccagatgtacatttc
aagtacatccaggcagcctgtaaaacgggacagatcaaggaagtggagagaatttgtcgt
gagagcaactgctatgacccagagcgtgtcaagaacttcttgaaggaggccaaactgacc
gatcaactgcccttgattattgtctgtgacagatttgactttgttcatgatctagtcttg
tatttgtacagaaacaatctgcaaaagtacattgaaatctacattcagaaggtgaaccct
gccagactgccagtagtcatcggtggattgctggatgtagactgcagtgaggacgccatc
aaacaactcatcatggtggtcaaaggacagttctccactgatgaacttgtagctgaagta
gagaaaagaaacagactgaagctgttattgccttggctggagatgagggtacatgaagga
gtacaagaaccagcgacacataatgccctcgccaaaatatacattgacagcaataacaac
ccagagagattcctcaaggagaaccagttttacgacagccttgttgtaggaaagtactgt
gagaagagagatcctcaccttgcttgtgtagcatacgaaagaggacagtgtgatgaggaa
ctcatccaggtgtgcaatgagaactccttgttcaagagtcagtcccgctacctagtgaag
cgtagagacatggacctttgggccaaggtgctgaatgaagacaatgagttcaggagacag
ctgattgaccaggtagtgcagactgctctgtccgagacccaggatcccgacgatatctcg
gtgacagtgaaggctttcatgacagcagatctacccaatgagctcattgagttgttggag
aagattgttctggatagctctgtcttcagtgaacacaggaacctacagaacttgctgatc
ctgactgccattaaagctgatcgcactcgtgtgatggagtacatcaacagactggataac
tatgacgccccagacattgcaaatattgcaatcactaatgaactgtatgaggaagctttt
gccatcttcaagaaatttgaagtcaacacatctgctatacaggtgctaattgacaacgta
aagaacttggaccgtgcttatgagtttgccgagcgttgcaacgacccagcagtctggagc
cagctcggacgtgctcagctgaatgaaaacatggtcaaagaagccattgattccttcatc
aaggctgatgatccatcacaatacatggaagttgtcaatgtagcagccagcaacaatagc
tgggaagatttagtcaaattcttgcaaatggcccgcaagaaagcaagagaaacatttata
gaaacagaattagtctttgcttatgcaaaaaccaacagattagcagatttagaagaattc
atttcagggccaaaccatgctaacatcacacaggtggcagacagatgcttcgacaacaaa
atgtatgaagctgccaaactactgtacaataacgtatctaactacgcccgcctggctatc
actttggtccatctaggagaatatcaaggagctgtggatggggcaaggaaagccaacagc
actaagacctggaaagaggtttgctttgcttgtgtgaacaatgaggagttcagactggcc
cagatgtgtggtctacacattgttgtacacgctgatgagctggaggaattaattaactac
taccaggatagaggcttctttgaggagttaatctccctactagaggcagcattaggatta
gaaagagcccatatgggtatgttcacagaattagccattttatactcaaaattcaaacct
gagaagatgagggaacacctagagctgttctggtctagagtcaacattccaaaagtatta
cgagcagccgaacaagcccacttgtggcccgagttagtcttcttgtatgataaatacgag
gagtatgataatgctatcattgcaatgatgaaccaccctacagaggcctggaaggagagc
cagttcaaagacatcatcacaaaagtcgccaacattgagctctactacaaagccattcaa
ttctacctggactttaaacctttacttcttaatgacttgctaatggtcctgacccctcgt
ctggaccacacccgggcggtcaacttcttcatcaaagtgaagcagatatccctggtgaag
ccgtacctccgcagcgtgcagaagaacaacaacaaagccattaacgaggcgctgaacaac
ctcctgattgaggaggaagattatcaaggtctgcaggcctccatcgatggctacgagaac
tttgacaacatcatgctggcccagcgactagagaaacacgaactcattgagttcaggaga
attgcagcctacttatacaaaggaaacaacagatggaaacagtctgttgatttatgcaag
aaggacaagcttttcaaggatgccatgtgttatgctagtgagtctagagacactggaata
gccgaggacttgattgcctggttcttggagaaccagtatcatgaatgctttgcggcgtca
ctgttccagtgttatgatctcttgcgacccgatgtgatactagaattggcatggagacat
aacatcatggactttgccatgccctacatgattcaggttgtgagggaatacatttccaag
gttgataagctggaacaagcagaaaatgtgagaagtgaggaggaacagaaagcagaggag
agacccattgtctttgcggaacctcaactgatgctgactgctggtccctccaacatgatg
cccccacctcaggctccttcaccccagcctccctatgggggccccgcctaccctgggatg
ggtggtggtgttcctacctatggctacagcatgtaa
DBGET
integrated database retrieval system
