Crassostrea gigas (Pacific oyster): 105340200
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Entry
105340200 CDS
T03920
Name
(RefSeq) mutS protein homolog 4-like isoform X1
KO
K08740
DNA mismatch repair protein MSH4
Organism
crg
Crassostrea gigas (Pacific oyster)
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
crg03036
]
105340200
Chromosome and associated proteins [BR:
crg03036
]
Eukaryotic type
Meiosis-specific proteins
Others
105340200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_II
MutS_IV
AAA_29
AAA_23
Motif
Other DBs
NCBI-GeneID:
105340200
NCBI-ProteinID:
XP_034303791
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Position
LG7:28452796..28469817
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AA seq
1110 aa
AA seq
DB search
MSMSAWSAHESKYAFSFMGTREDSNADQQTETQHTISKTGDIPDHHAGVPALEVPVGNSK
RQFDFNMNSSGDKSNPPKDPPRMPIVLSNAVYFSKTYRSRNLRKNQDPQSASTDSQRFDI
ANGVQQLRHGVASELLDFSFKKKTKTCTFADTQKSSIQVSDQIDSIDSSSGINRILSTDG
SDEISRNQRSIYSDFSDGITPGTSDSNQSGGGSGKSVDRNLRSSTGTSGYSCGTDTGSSD
SWAVGRKRGLFMSETPLPGMTPHARVPQGSKLFKTPLNVKRKTPSSSSRMASTLFGSSTG
RSVGSSFVHESGSRSCDPKSTPHTRSAAVNSNSAVIVAIVEGRGMARGEIGLASIDLRSP
TLNLSQFSDTQTYVQTMTKLHRCQPVEIIMPNTACENGAMTKLFKLVTHQFQNSNVSTVQ
RKYFNETKGLQFVKQLCVSDFNSVVMELTTKYYCLAAAAALVKYVEFTQNMILAPASINV
IFSGCENTTMIDATTAVNLELLQNIRDPKSEHTLYGVLNYTKTIGGARLLRANILQPPCD
LGTITMRQEVVSELTEKEDLFDNIQTVIARFLDIDHVLSMCVQIPKQETLKTAEANINNI
IYLKHILELVDPLRNALSNCENRLMKHFYKSLDDGRYALMKAKISSVIHDDTKYQKGMLH
MRTQKCFAVKGSINGLLDIGRGTYAGIIEDINNLANQLAEEYSLPIVTSYNSTRGFFLQL
NCGPKSTYSKESLPGIFIKVTKAKNALCFTTSDLIRLNNRAREALDEIYLVTNIVVTELL
GDLRNHFGCLYKLSEAVSMIDMLQSFAHACTLSSYVKPEFTKDTFAVKQGRHPILERITP
DMPVPNNIYATEDANFNLITGANMSGKSTYLRQIVLLQIMAQIGCFIPAEYGSFRITDQI
FSRIGSDDDIESNSSTFMLEMKEVNYIIQNVSHRSLIIMDELGRGTSQEEGVGICHSVCE
YLLRFKAFVFFATHFMDLGHLENLYPNVQNYSFMILKTFNENDQSEKVVYTHVLTKGLNK
EENYGIRLAELSTLPRDVIQQAKTLANLISTKRGKQHEVDKEMREKRIVFKLAARLVQLS
RNSRLSKTDLKSYMKSLKAQYIADTKSLEE
NT seq
3333 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatgtcagcatggtcagcacatgaatcgaaatacgcttttagttttatgggcaca
agagaagattcaaatgctgatcaacaaactgaaacccaacacacaatatctaagacaggg
gatattccagatcatcatgctggagtacctgcattagaagttcctgtaggaaattctaaa
agacaatttgattttaatatgaatagtagtggagacaaatcaaatccaccaaaagatcca
ccaagaatgccaattgttctgtcaaatgctgtctatttttcaaaaacgtacagaagtaga
aacctaagaaaaaaccaggatccacaaagtgcaagtacagacagtcagagatttgatatt
gctaatggtgttcaacagttgaggcatggtgtggcatcagagcttttagatttttccttc
aaaaagaagacaaaaacttgcacttttgcagacacccaaaaatcatcaattcaagtgtca
gatcaaattgacagcatagacagcagttctggtatcaatagaatcctgagcacagatgga
agtgatgaaatatctagaaatcaaagaagcatttacagtgacttcagtgatggaattacc
cccggaacaagtgactccaatcaaagcggaggaggatctggtaaatctgtggacaggaac
ttgaggagtagcaccggtaccagtggatacagctgtgggacagacaccggctccagtgac
tcttgggcagtggggaggaaaagagggttatttatgtctgagacacctctaccaggaatg
actcctcatgccagagtccctcaaggttccaaattgttcaagacaccactgaatgtaaaa
aggaaaactccaagctcctccagtagaatggcatcaactctctttggaagctcgactggt
agatctgttggctccagttttgtgcatgaatctggttcaagatcctgtgacccaaagtct
actccacacaccagatcagctgcagttaattctaactcagcagtcattgtggcaattgtg
gaggggcgtggtatggcaagaggagagattggattggccagcatagatttgaggtcccca
acattgaacttatcccagttttcagacactcagacttatgttcagacaatgaccaagctt
cacagatgtcaacctgttgagattataatgccaaacacagcctgcgagaatggagccatg
acaaagcttttcaaactagtgactcaccaattccagaactccaatgtgtccacagtacag
agaaagtatttcaatgaaacaaaaggtttgcaatttgtgaaacaactctgtgtttctgat
ttcaattctgtggtcatggagttaaccaccaagtattattgcttagctgcagcagcagct
cttgtaaagtatgtggaatttactcaaaatatgatcttagcaccagcatccatcaatgtc
attttcagtgggtgtgaaaatacaaccatgatagatgccacaacagctgttaaccttgaa
ctcttacaaaacatcagagatcctaagagtgagcacactttatatggagtcctgaattac
acaaagaccattggaggggctcgtttactgagagccaacattctacagccaccatgtgac
ctcggaaccattaccatgaggcaggaagtggtctcagaactgacagaaaaagaggacttg
tttgacaacattcagactgtgattgcaaggtttctggacatcgatcatgttctgtctatg
tgtgtgcaaatcccgaaacaagaaactctaaaaactgcagaggccaacatcaacaatatc
atatacctcaaacacattctagaactggtggaccctctgaggaatgctctctcaaactgt
gaaaatcgactgatgaaacatttctacaagtcgttggatgatggcaggtatgcattgatg
aaggccaagatatccagtgtaattcatgatgacaccaaatatcagaaagggatgctgcat
atgcgtactcagaagtgttttgctgtcaagggaagtatcaatggactccttgacattgga
agagggacttatgctggaattattgaggacatcaacaacctagctaaccaattggcagag
gaatacagtttaccaatagtgacatcctataactcaactagaggcttctttctgcagctc
aactgtggtccaaaaagtacctatagcaaagaaagcttgcctggaatatttatcaaagtc
acaaaagccaagaatgcactttgtttcacaacatcagatttgattcgtttaaataacaga
gcaagagaagcattggatgagatatatctggtgaccaacatagtggtgacagagttgcta
ggagatctaaggaaccattttggctgtctgtacaaattgtctgaagctgtgtccatgatt
gacatgttacagagctttgctcatgcctgtactctgtccagttatgtcaagcctgagttt
accaaagatacatttgctgttaaacagggtagacatccaatacttgagagaattactcct
gatatgcctgttcccaataacatttatgctacagaagatgccaactttaatctcattact
ggtgccaacatgagtggcaagagcacatatctaagacagatagtgttgttacaaatcatg
gctcagattggatgctttatccctgctgagtatggctcctttagaataacggaccagatc
ttctctaggataggcagtgatgatgacatagagtccaactcctctacattcatgttagaa
atgaaagaagtgaattacatcatacagaatgtcagtcacaggtctcttatcataatggat
gaacttggaagaggaacaagccaagaagaaggagtaggaatctgtcactctgtttgtgaa
taccttctcagatttaaggcatttgtcttctttgccacccatttcatggaccttggccat
ctggagaatttgtatccaaatgtacaaaactacagtttcatgatactcaaaacatttaac
gagaatgatcagagtgaaaaagtggtttatacccatgtactgacgaaaggtctgaacaag
gaggaaaattacggcattagactggctgaattgtcaaccctcccaagagatgtaattcag
caagccaaaacccttgccaatttgatttctacaaagagagggaaacagcatgaagtggat
aaggagatgagagagaaaagaattgtcttcaagctcgcagcgcgattggttcaactgtct
cgtaattccagactcagcaagactgacttgaagtcctacatgaaaagcttaaaggcacaa
tatattgcagacaccaaatctctagaagaatga
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